Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0465 ATGGAGCTTCATAAGCGCCAAGATCAGGGCCTCCCCGAGAGGAAGGGCCAGAAACGGAAACTGGAGGAAGATTTCGAAGACGAGCGAGAGATCTCGGCGCCTCCTACCGGTGACGCTCGAGACGCCCTCCTCGCGGAGGTCACAGCGCAGGTTGAGATCCTCGACTCCAATTTTTCATGGCGTGAAGCCGATCGAGCCGCTGCTAAGCGTGCGACTCATGTTCTCGCCGAGCTTGCTAAGAATGAGGAAGTTGTGAACGTGATTGTTGAAGGAGGCGCGATTCCGTCTTTGGTTAAGCATCTTCAAGCGCCGCCTTCGAGTGAAGGCGATCGTGGTCAAAAGCCATTCGAGCACGAGGTCGAGAAAGGGAGTGCTTTCGCTCTGGGACTTCTTGCTGTAAAGCCAGAACATCAACAACTAATTGTTGACAACGGTGCCTTAAAACATCTTGTTGATCTGTTAAAGAGACATAAGAATTTCTCTACTTCCCGTGCTGTGAATAGTGTCATTCGAAGGGCTGCAGATGCAATCACCAATCTTGCTCATGAGAACAGCAACATTAAAAGCCGTGTCAGGATGGAAGGTGGAATTCCACCGCTTGTTGAATTGCTTCAATTTACTGATACAAAGGTGCAAAGAGCAGCTGCTGGCGCACTGCGAACTCTCGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGATTGCAATGCTCTTCCAACTCTAATTTTAATGCTCCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTAATAGGAAATCTTGTACACTCTTCACCTAATATAAAGAAAGATGTTCTTCTTGCTGGGGCTTTACAACCTGTTATTGGATTACTTAGCTCCTGCTGCTCCGAGAGCCAAAGGGAAGCTGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGATTGTAAGGTTCACATTGTTCAGAGAGGTGCTGTCCGACCTCTGATAGAGATGCTTCAGTCTCCTGATGTACAACTCAGAGAAATGTCTGCCTTTGCTTTGGGGAGACTCGCACAGGACACCCATAACCAAGCTGGTATAGCACACAATGGTGGCTTAGTGCCATTACTCAAGCTCCTTGACTCAAAAAATGGGTCTTTGCAGCATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCTGATTTCATTAGGGTAGGTGGTGTTCAGAGACTCCAGGATGGAGAGTTTATTGTTCAAGCAACAAAAGATTGTGTCGCAAAGACGTTGAAAAGATTAGAGGAGAAGATTCATGGCCGTGTCCTGAACCATTTGTTATATCTTATGCGAGTTTCAGAGAAGGCTATCCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTGCAGTTGATCAGAGAACCATTTTCATTGATAACAATGGTTTGGAATTTCTTATTGGGCTTCTTGGCTCTGCTAGTCCTAAGCAGCAACTTGATGGTGCTGTTGCTTTATGGAAGTTGGCCAACAAAGCCACGACTCTATCACCAATAGATGCTGCCCCTCCTTCCCCAACGCCCCAGGTTTATTTGGGAGAGCAGTATGTGAACAATGCTACATTGTCTGACGTAACATTTTTGGTTGAAGGGAAACGATTTTATGCTCACAGAATCTGCCTACTTGCATCTTCAGATGCTTTTCGTGCTATGTTTGACGGTGGTTATAGGGAGAAGGATGCAAGAGACATAGAGATTCCAAACATTAGGTGGGAAGTCTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATGTTACTCTTGATATTGCCCAAGATCTCCTCAGAGCAGCTGATCAATATCTCTTAGAAGGACTTAAGAGACTTTGTGAGTACACGATAGCACAGGATATATCACTGGAGAATGTTTCTAGCATGTATGAACTCTCAGAAGCCTTCAATGCAATGTCATTGAGGCACACATGCATCCTTTTTATCATGGAGCACTTTGATAAATTGAGTGCGAGACCAGGAACATGGTAG 2034 0.4484 MELHKRQDQGLPERKGQKRKLEEDFEDEREISAPPTGDARDALLAEVTAQVEILDSNFSWREADRAAAKRATHVLAELAKNEEVVNVIVEGGAIPSLVKHLQAPPSSEGDRGQKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLKRHKNFSTSRAVNSVIRRAADAITNLAHENSNIKSRVRMEGGIPPLVELLQFTDTKVQRAAAGALRTLAFKNDENKNQIVDCNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKDVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAIQRRVALALAHLCSAVDQRTIFIDNNGLEFLIGLLGSASPKQQLDGAVALWKLANKATTLSPIDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAMSLRHTCILFIMEHFDKLSARPGTW 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0465 677 Pfam Armadillo/beta-catenin-like repeat 310 349 IPR000225 GO:0005515
Prci4g0465 677 Pfam Armadillo/beta-catenin-like repeat 135 181 IPR000225 GO:0005515
Prci4g0465 677 Pfam Armadillo/beta-catenin-like repeat 188 223 IPR000225 GO:0005515
Prci4g0465 677 Pfam Armadillo/beta-catenin-like repeat 226 265 IPR000225 GO:0005515
Prci4g0465 677 SUPERFAMILY ARM repeat 436 609 IPR016024 -
Prci4g0465 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 230 IPR000225 GO:0005515
Prci4g0465 677 SMART arm_5 351 391 IPR000225 GO:0005515
Prci4g0465 677 SMART arm_5 268 308 IPR000225 GO:0005515
Prci4g0465 677 SMART arm_5 184 224 IPR000225 GO:0005515
Prci4g0465 677 SMART arm_5 466 506 IPR000225 GO:0005515
Prci4g0465 677 SMART arm_5 81 133 IPR000225 GO:0005515
Prci4g0465 677 SMART arm_5 226 266 IPR000225 GO:0005515
Prci4g0465 677 SMART arm_5 134 182 IPR000225 GO:0005515
Prci4g0465 677 SMART arm_5 310 350 IPR000225 GO:0005515
Prci4g0465 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Prci4g0465 677 MobiDBLite consensus disorder prediction 1 39 - -
Prci4g0465 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 404 IPR000225 GO:0005515
Prci4g0465 677 Gene3D Potassium Channel Kv1.1; Chain A 529 673 IPR011333 -
Prci4g0465 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 321 363 IPR000225 GO:0005515
Prci4g0465 677 FunFam Armadillo/beta-catenin repeat family protein 529 673 - -
Prci4g0465 677 Pfam BTB/POZ domain 531 633 IPR000210 GO:0005515
Prci4g0465 677 CDD BTB_POZ_ARIA_plant 525 640 - -
Prci4g0465 677 SUPERFAMILY ARM repeat 63 409 IPR016024 -
Prci4g0465 677 Gene3D - 274 429 IPR011989 -
Prci4g0465 677 Gene3D - 430 514 IPR011989 -
Prci4g0465 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 146 IPR000225 GO:0005515
Prci4g0465 677 Gene3D - 45 163 IPR011989 -
Prci4g0465 677 ProSiteProfiles BTB domain profile. 538 605 IPR000210 GO:0005515
Prci4g0465 677 SMART BTB_4 538 635 IPR000210 GO:0005515
Prci4g0465 677 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 675 IPR044282 -
Prci4g0465 677 Gene3D - 164 273 IPR011989 -
Prci4g0465 677 SUPERFAMILY POZ domain 530 632 IPR011333 -
Prci4g0465 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 195 IPR000225 GO:0005515
Prci4g0465 677 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0465 Prci-Chr4 3200684 3208968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0465 294 506 U-box Gene Family AT3G46510 24.444 2.21e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Prci4g0465 BTB 5.7e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0465 - - vvi:100249437 1208.74