Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0464 ATGGAGCTTCATAAGCGCCAAGATCAGGGCCTCCCCGAGAGGAAGGGCCAGAAACGGAAACTGGAGGAAGATTTCGAAGACGAGCGAGAGATCTCGGCGCCTCCTACCGGTGACGCTCGAGACGCCCTCCTCGCGGAGGTCACAGCGCAGGTTGAGATCCTCGACTCCAATTTTTCATGGCGTGAAGCCGATCGAGCCGCTGCTAAGCGTGCGACTCATGTTCTCGCCGAGCTTGCTAAGAATGAGGAAGTTGTGAACGTGATTGTTGAAGGAGGCGCGATTCCGTCTTTGGTTAAGCATCTTCAAGCGCCGCCTTCGAGTGAAGGCGATCGTGGTCAAAAGCCATTCGAGCACGAGGTCGAGAAAGGGAGTGCTTTCGCTCTGGGACTTCTTGCTGTAAAGCCAGAACATCAACAACTAATTGTTGACAACGGTGCCTTAAAACATCTTGTTGATCTGTTAAAGAGACATAAGAATTTCTCTACTTCCCGTGCTGTGAATAGTGTCATTCGAAGGGCTGCAGATGCAATCACCAATCTTGCTCATGAGAACAGCAACATTAAAAGCCGTGTCAGGATGGAAGGTGGAATTCCACCGCTTGTTGAATTGCTTCAATTTACTGATACAAAGGTGCAAAGAGCAGCTGCTGGCGCACTGCGAACTCTCGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGATTGCAATGCTCTTCCAACTCTAATTTTAATGCTCCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTAATAGGAAATCTTGTACACTCTTCACCTAATATAAAGAAAGATGTTCTTCTTGCTGGGGCTTTACAACCTGTTATTGGATTACTTAGCTCCTGCTGCTCCGAGAGCCAAAGGGAAGCTGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGATTGTAAGGTTCACATTGTTCAGAGAGGTGCTGTCCGACCTCTGATAGAGATGCTTCAGTCTCCTGATGTACAACTCAGAGAAATGTCTGCCTTTGCTTTGGGGAGACTCGCACAGGACACCCATAACCAAGCTGGTATAGCACACAATGGTGGCTTAGTGCCATTACTCAAGCTCCTTGACTCAAAAAATGGGTCTTTGCAGCATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCTGATTTCATTAGGGTAGGTGGTGTTCAGAGACTCCAGGATGGAGAGTTTATTGTTCAAGCAACAAAAGATTGTGTCGCAAAGACGTTGAAAAGATTAGAGGAGAAGATTCATGGCCGTGTCCTGAACCATTTGTTATATCTTATGCGAGTTTCAGAGAAGGCTATCCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTGCAGTTGATCAGAGAACCATTTTCATTGATAACAATGGTATACGTTATTCCTGCATAAAATTAATTTTATGGCCGTTCTATTTTACTCACTGTTTATGTGTTCTTGTAGGTTTGGAATTTCTTATTGGGCTTCTTGGCTCTGCTAGTCCTAAGCAGCAACTTGATGGTGCTGTTGCTTTATGGAAGTTGGCCAACAAAGCCACGACTCTATCACCAATAGATGCTGCCCCTCCTTCCCCAACGCCCCAGGTTTATTTGGGAGAGCAGTATGTGAACAATGCTACATTGTCTGACGTAACATTTTTGGTTGAAGGGAAACGATTTTATGCTCACAGAATCTGCCTACTTGCATCTTCAGATGCTTTTCGTGCTATGTTTGACGGTGGTTATAGGGAGAAGGATGCAAGAGACATAGAGATTCCAAACATTAGGTGGGAAGTCTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATGTTACTCTTGATATTGCCCAAGATCTCCTCAGAGCAGCTGATCAATATCTCTTAGAAGGACTTAAGAGACTTTGTGAGTACACGATAGCACAGGATATATCACTGGAGAATGTTTCTAGCATGTATGAACTCTCAGAAGCCTTCAATGCAATGTCATTGAGGCACACATGCATCCTTTTTATCATGGAGCACTTTGATAAATTGAGTGCGAGACCAGGGCACTCTTGTCTGGTTCAACGTATAATACCAGAGATCCGCAATTATTTTGCTAAAGCGCTCACAAAAGCTAACTCCCGTGACATCCGGCTGTAG 2190 0.4443 MELHKRQDQGLPERKGQKRKLEEDFEDEREISAPPTGDARDALLAEVTAQVEILDSNFSWREADRAAAKRATHVLAELAKNEEVVNVIVEGGAIPSLVKHLQAPPSSEGDRGQKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLKRHKNFSTSRAVNSVIRRAADAITNLAHENSNIKSRVRMEGGIPPLVELLQFTDTKVQRAAAGALRTLAFKNDENKNQIVDCNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKDVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAIQRRVALALAHLCSAVDQRTIFIDNNGIRYSCIKLILWPFYFTHCLCVLVGLEFLIGLLGSASPKQQLDGAVALWKLANKATTLSPIDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAMSLRHTCILFIMEHFDKLSARPGHSCLVQRIIPEIRNYFAKALTKANSRDIRL 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0464 729 FunFam Armadillo/beta-catenin repeat family protein 553 697 - -
Prci4g0464 729 Pfam Armadillo/beta-catenin-like repeat 188 223 IPR000225 GO:0005515
Prci4g0464 729 Pfam Armadillo/beta-catenin-like repeat 226 265 IPR000225 GO:0005515
Prci4g0464 729 Pfam Armadillo/beta-catenin-like repeat 310 349 IPR000225 GO:0005515
Prci4g0464 729 SMART arm_5 351 391 IPR000225 GO:0005515
Prci4g0464 729 SMART arm_5 184 224 IPR000225 GO:0005515
Prci4g0464 729 SMART arm_5 268 308 IPR000225 GO:0005515
Prci4g0464 729 SMART arm_5 81 133 IPR000225 GO:0005515
Prci4g0464 729 SMART arm_5 226 266 IPR000225 GO:0005515
Prci4g0464 729 SMART arm_5 134 182 IPR000225 GO:0005515
Prci4g0464 729 SMART arm_5 310 350 IPR000225 GO:0005515
Prci4g0464 729 Pfam BTB/POZ domain 555 657 IPR000210 GO:0005515
Prci4g0464 729 Gene3D - 47 413 IPR011989 -
Prci4g0464 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 230 IPR000225 GO:0005515
Prci4g0464 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Prci4g0464 729 MobiDBLite consensus disorder prediction 1 39 - -
Prci4g0464 729 ProSiteProfiles BTB domain profile. 562 629 IPR000210 GO:0005515
Prci4g0464 729 SUPERFAMILY ARM repeat 63 409 IPR016024 -
Prci4g0464 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 404 IPR000225 GO:0005515
Prci4g0464 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 321 363 IPR000225 GO:0005515
Prci4g0464 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 146 IPR000225 GO:0005515
Prci4g0464 729 SMART BTB_4 562 659 IPR000210 GO:0005515
Prci4g0464 729 CDD BTB_POZ_ARIA_plant 549 664 - -
Prci4g0464 729 Gene3D - 416 538 IPR011989 -
Prci4g0464 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 195 IPR000225 GO:0005515
Prci4g0464 729 MobiDBLite consensus disorder prediction 1 35 - -
Prci4g0464 729 SUPERFAMILY POZ domain 554 656 IPR011333 -
Prci4g0464 729 Gene3D Potassium Channel Kv1.1; Chain A 553 697 IPR011333 -
Prci4g0464 729 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 723 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0464 Prci-Chr4 3200684 3208970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0464 294 408 U-box Gene Family AT3G46510 29.915 4.09e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Prci4g0464 BTB 6.4e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0464 - - vvi:100249437 1236.48