Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0462 ATGATGCGGTTGCGCCGTCCTATGTATGGTGTTGGGGATCCATTTGCCATGGATGCTGATGATCAGTTAAGGAAGAAAAGGGATGCTGAGAGATTGTCAAAATTAGAAGAGGAGGAAAAGAATCAAATAGAGACCAGAAAAAGAAAATTTTTTGCAGAAATACTTAATGCTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAACGAAGAAAACAGAGAAATGATGGTGTTCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACACGGGCTGAGAAATTGAGGTTTCAAGCCTTAAAGGCTGATGATCAAGAAGCTTATATGAGAATGGTCAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAGGAAACAAATAAGTTGCTTGTAAATTTGGGAGCAGCTGTTCAGCGTCAAAAGGACTCAAAACAAACAGATGGCATTGAACCTTTGGAAGACTCAGAAGCTGAACTACCAGAGTCAGATGGTTCTAAGAATGGAATATCCAAGGAATCACCTCCTGAGGAATATGCTGATATGATAGATTCTGATCATAATGGTGACACTAGTGATTTACTTGAAGGTCAACGGCAATACCACTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCTTCCATCCTTCAAGGTGGAGAGTTAAGACCATATCAGTTAGAAGGGCTTCAGTGGATGCTTTCTTTGTTCAATAACAATCTAAATGGAATTTTGGCGGACGAAATGGGGCTGGGGAAGACAATACAAACAATTTCTTTGATAGCATATCTTATGGAGAACAAGGGTGTGACTGGTCCCCACTTGATTGTGGCTCCAAAAGCTGTTCTGCCAAATTGGATAAATGAATTCTCGACATGGGTTCCAAGCATTACAACTGTTCTTTATGATGGACGGTTGGATGAGCGAAAAGCAATGAAGGAGGAATTGTCAGGAGAGGGGAAGTTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAGGCATTTCTCAAGAAAATTCACTGGTTCTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCAAGAACGCTTGACTCTGGCTATCACATCCAACGTAGACTCCTGCTGACTGGCACCCCTATTCAGAACAGTTTGCAGGAACTGTGGTCCCTTCTTAATTTTCTCCTTCCAAACATTTTTAATTCAGTTCAAAATTTTGAGGACTGGTTTAATGCCCCCTTTGCGGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGCTATTGATCATTCGTCGTCTTCATCAAGTAATAAGACCCTTCATATTGAGAAGGAAGAAAGATGAGGTGGAAAAATATCTTCCGGGGAAATCTCAGGTCATACTCAAATGTGACATGTCATCATGGCAGAAAGTATATTATCAACAAGTTACTGACTTGGGCAGAGTTGGCTTGGACAATGGCACTGGGAAATCCAAGAGTCTACAGAATTTAACAATGCAACTCAGAAAGTGTTGTAATCATCCCTACCTCTTTGTGGGAGAACATAATATGTGGAACAAGGATGAGATAGTCCGAGCATCAGGGAAGTTTGAACTCCTCGATCGTTTGCTACCAAAACTTCGCAGAACTGGGCACAGGGTCCTTCTGTTCTCACAAATGACTCGTCTCATGGATATTCTTGAAATTTATCTGCGTCTTCATGATTTCAAGTTTCTTAGACTCGATGGCTCAACAAAAACTGAGGAAAGAGGGACTCTACTGCGACAGTTCAATGCTCCTGACTCTCCATATTTTATGTTTCTTTTGAGCACCCGTGCTGGAGGCCTTGGTCTAAACTTGCAAACAGCAGATACTGTCATAATTTTTGACAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGAGCTCATCGCATTGGACAGAAAAAAGAAGTAAGGGTTTTTGTGCTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTCATCCAGGCGGGGCTTTTTAACACAACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAAGAGATTATGCGCAGAGGCACAAGCTCACTTGGGACTGATGTGCCAAGTGAGAGGGAAATCAACCGCCTTGCAGCTCGATCAGATGAAGAATTTTGGTTGTTTGAGAGAATGGATGAAGAGAGAAGGCAGAAGGAGAACTACAGATCTCGCCTCATGGAAGAACATGAAGTGCCAGATTGGGTGTATTCTGCAACAGTGAACAAGGATGACAAGGTGAAAAGTTCTGCTTTTGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTTTATGCTGATACGTTAAGTGATCTACAATGGATGAAAGCTGTGGAGAATGGGGAAGACGTGTCAAGACTTCCAGTTAAAGGGAGAAGAAGAGACCACCTGCCACCCGACAGCAACACAATTGCTGGTGATAACGTGCAAGCAGAAGAAAGTTTTTCTGAACTACAAAATGAAAGCTTCTCTATGGCGAAAGAGAGATCAAGTGAAGACTCATTCCATGTCAACCCTGGTCCTGCCCCAAAAAGACTCAGGCAGGAAGTAATAAATACACAGAAACATGAATACGAGGGCGTCAGAGGAAGTGTTTTGAATGAGCATATGTTTTCCTGGAATACCTATAGAAAGAAAAGATCAAGCAGTCTTGCTCAGAGCTCATCGTTATCTGATTCCAGGGGGCAAAGTTCAATGGAAGAGCAAATTGGAGCTGATGTGCCATGGCTACCTATCTTTACCATAGCAATGAAGCTGTGA 2844 0.4205 MMRLRRPMYGVGDPFAMDADDQLRKKRDAERLSKLEEEEKNQIETRKRKFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQTDGIEPLEDSEAELPESDGSKNGISKESPPEEYADMIDSDHNGDTSDLLEGQRQYHSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWINEFSTWVPSITTVLYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWFYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSSWQKVYYQQVTDLGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGEHNMWNKDEIVRASGKFELLDRLLPKLRRTGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGTLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFERMDEERRQKENYRSRLMEEHEVPDWVYSATVNKDDKVKSSAFGSVTGKRKRKEVVYADTLSDLQWMKAVENGEDVSRLPVKGRRRDHLPPDSNTIAGDNVQAEESFSELQNESFSMAKERSSEDSFHVNPGPAPKRLRQEVINTQKHEYEGVRGSVLNEHMFSWNTYRKKRSSSLAQSSSLSDSRGQSSMEEQIGADVPWLPIFTIAMKL 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0462 947 Pfam Helicase conserved C-terminal domain 535 648 IPR001650 -
Prci4g0462 947 FunFam Chromatin structure-remodeling complex protein SYD 216 459 - -
Prci4g0462 947 Pfam Snf2-ATP coupling, chromatin remodelling complex 737 803 IPR029295 GO:0042393
Prci4g0462 947 MobiDBLite consensus disorder prediction 178 194 - -
Prci4g0462 947 MobiDBLite consensus disorder prediction 819 871 - -
Prci4g0462 947 MobiDBLite consensus disorder prediction 142 195 - -
Prci4g0462 947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 702 IPR027417 -
Prci4g0462 947 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 237 403 IPR014001 -
Prci4g0462 947 SMART SnAC_2 741 803 IPR029295 GO:0042393
Prci4g0462 947 Pfam SNF2-related domain 228 516 IPR000330 GO:0005524|GO:0140658
Prci4g0462 947 Gene3D - 194 449 IPR038718 -
Prci4g0462 947 Coils Coil 739 759 - -
Prci4g0462 947 CDD SF2_C_SNF 526 659 - -
Prci4g0462 947 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 538 705 IPR001650 -
Prci4g0462 947 SMART helicmild6 564 648 IPR001650 -
Prci4g0462 947 SMART ultradead3 221 414 IPR014001 -
Prci4g0462 947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 450 IPR027417 -
Prci4g0462 947 MobiDBLite consensus disorder prediction 1 42 - -
Prci4g0462 947 MobiDBLite consensus disorder prediction 910 929 - -
Prci4g0462 947 MobiDBLite consensus disorder prediction 18 42 - -
Prci4g0462 947 FunFam Probable ATP-dependent DNA helicase CHR12 456 754 - -
Prci4g0462 947 MobiDBLite consensus disorder prediction 831 853 - -
Prci4g0462 947 Coils Coil 19 49 - -
Prci4g0462 947 PANTHER SNF2/RAD54 HELICASE FAMILY 21 845 - -
Prci4g0462 947 Gene3D - 456 755 IPR027417 -
Prci4g0462 947 MobiDBLite consensus disorder prediction 910 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0462 Prci-Chr4 3170605 3178896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0462 207 675 RAD5 or RAD16-like Gene Family AT1G02670 26.335 6.29e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci4g0462 SNF2_N 1.7e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0462 - - pcin:129308606 1863.97