Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0461 ATGGCTCAGCTGCAGAGCCAACAGCAGCAGCAGCCACCCATTGATCATGCCCAGAAGACCAAGACTCTCATTTGTGCTCTCAACCTTGTCTCCCGTAACCTCCCTCTGCCTCCTGATCTTTTCAACACCGTTTCTTCCATCTATCATGGCGTCGAAGATGCTTCCAGTAATGGCCATGAATTTGAGGTCCCTGATGGGAGTGGGGGTGGAGCCGGATCTGAAGAGAAACAGGTGGATGCCCCTGCTGACAAGGTTTTGGATAATGCAGGAAATTCTAGAGAAGATTTGTTGACGGATCTTGAAGATGCACTATTGAAACAAAGACCAAGTTGTGTGTCGGGTTACAAATTGAAGGAAGAACGGGAAAGCCGTTATAAAAGTCAGATCAAGCATCGGTTAAATGAACTTGAAGGATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAGCTGTATGCACTGAAGCTAGCAGAGTTACAGAAGAAGGTTCGATCTGATGTGAGTGCTGAATACTGGCTCAATGTTAAATGTGCATATCCTGACAGGCAGTTGTTTGACTGGGGAATGATGCGGTTGCGCCGTCCTATGTATGGTGTTGGGGATCCATTTGCCATGGATGCTGATGATCAGTTAAGGAAGAAAAGGGATGCTGAGAGATTGTCAAAATTAGAAGAGGAGGAAAAGAATCAAATAGAGACCAGAAAAAGAAAATTTTTTGCAGAAATACTTAATGCTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAACGAAGAAAACAGAGAAATGATGGTGTTCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACACGGGCTGAGAAATTGAGGTTTCAAGCCTTAAAGGCTGATGATCAAGAAGCTTATATGAGAATGGTCAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAGGAAACAAATAAGTTGCTTGTAAATTTGGGAGCAGCTGTTCAGCGTCAAAAGGACTCAAAACAAACAGATGGCATTGAACCTTTGGAAGACTCAGAAGCTGAACTACCAGAGTCAGATGGTTCTAAGAATGGAATATCCAAGGAATCACCTCCTGAGGAATATGCTGATATGATAGATTCTGATCATAATGGTGACACTAGTGATTTACTTGAAGGTCAACGGCAATACCACTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCTTCCATCCTTCAAGGTGGAGAGTTAAGACCATATCAGTTAGAAGGGCTTCAGTGGATGCTTTCTTTGTTCAATAACAATCTAAATGGAATTTTGGCGGACGAAATGGGGCTGGGGAAGACAATACAAACAATTTCTTTGATAGCATATCTTATGGAGAACAAGGGTGTGACTGGTCCCCACTTGATTGTGGCTCCAAAAGCTGTTCTGCCAAATTGGATAAATGAATTCTCGACATGGGTTCCAAGCATTACAACTGTTCTTTATGATGGACGGTTGGATGAGCGAAAAGCAATGAAGGAGGAATTGTCAGGAGAGGGGAAGTTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAGGCATTTCTCAAGAAAATTCACTGGTTCTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCAAGAACGCTTGACTCTGGCTATCACATCCAACGTAGACTCCTGCTGACTGGCACCCCTATTCAGAACAGTTTGCAGGAACTGTGGTCCCTTCTTAATTTTCTCCTTCCAAACATTTTTAATTCAGTTCAAAATTTTGAGGACTGGTTTAATGCCCCCTTTGCGGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGCTATTGATCATTCGTCGTCTTCATCAAGTAATAAGACCCTTCATATTGAGAAGGAAGAAAGATGAGGTGGAAAAATATCTTCCGGGGAAATCTCAGGTCATACTCAAATGTGACATGTCATCATGGCAGAAAGTATATTATCAACAAGTTACTGACTTGGGCAGAGTTGGCTTGGACAATGGCACTGGGAAATCCAAGAGTCTACAGAATTTAACAATGCAACTCAGAAAGTGTTGTAATCATCCCTACCTCTTTGTGGGAGAACATAATATGTGGAACAAGGATGAGATAGTCCGAGCATCAGGGAAGTTTGAACTCCTCGATCGTTTGCTACCAAAACTTCGCAGAACTGGGCACAGGGTCCTTCTGTTCTCACAAATGACTCGTCTCATGGATATTCTTGAAATTTATCTGCGTCTTCATGATTTCAAGTTTCTTAGACTCGATGGCTCAACAAAAACTGAGGAAAGAGGGACTCTACTGCGACAGTTCAATGCTCCTGACTCTCCATATTTTATGTTTCTTTTGAGCACCCGTGCTGGAGGCCTTGGTCTAAACTTGCAAACAGCAGATACTGTCATAATTTTTGACAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGAGCTCATCGCATTGGACAGAAAAAAGAAGTAAGGGTTTTTGTGCTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTCATCCAGGCGGGGCTTTTTAACACAACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAAGAGATTATGCGCAGAGGCACAAGCTCACTTGGGACTGATGTGCCAAGTGAGAGGGAAATCAACCGCCTTGCAGCTCGATCAGATGAAGAATTTTGGTTGTTTGAGAGAATGGATGAAGAGAGAAGGCAGAAGGAGAACTACAGATCTCGCCTCATGGAAGAACATGAAGTGCCAGATTGGGTGTATTCTGCAACAGTGAACAAGGATGACAAGGTGAAAAGTTCTGCTTTTGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTTTATGCTGATACGTTAAGTGATCTACAATGGATGAAAGCTGTGGAGAATGGGGAAGACGTGTCAAGACTTCCAGTTAAAGGGAGAAGAAGAGACCACCTGCCACCCGACAGCAACACAATTGCTGGTGATAACGTGCAAGCAGAAGAAAGTTTTTCTGAACTACAAAATGAAAGCTTCTCTATGGCGAAAGAGAGATCAAGTGAAGACTCATTCCATGTCAACCCTGGTCCTGCCCCAAAAAGACTCAGGCAGGAAGTAATAAATACACAGAAACATGAATACGAGGGCGTCAGAGGAAGTGTTTTGAATGAGCATATGTTTTCCTGGAATACCTATAGAAAGAAAAGATCAAGCAGTCTTGCTCAGAGCTCATCGTTATCTGATTCCAGGGGGCAAAGTTCAATGGAAGAGCAAATTGGAGCTGATGTGCCATGGCTACCTATCTTTACCATAGCAATGAAGCTGTGA 3420 0.4298 MAQLQSQQQQQPPIDHAQKTKTLICALNLVSRNLPLPPDLFNTVSSIYHGVEDASSNGHEFEVPDGSGGGAGSEEKQVDAPADKVLDNAGNSREDLLTDLEDALLKQRPSCVSGYKLKEERESRYKSQIKHRLNELEGLPSSRGEDLQTKCLLELYALKLAELQKKVRSDVSAEYWLNVKCAYPDRQLFDWGMMRLRRPMYGVGDPFAMDADDQLRKKRDAERLSKLEEEEKNQIETRKRKFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQTDGIEPLEDSEAELPESDGSKNGISKESPPEEYADMIDSDHNGDTSDLLEGQRQYHSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWINEFSTWVPSITTVLYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWFYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSSWQKVYYQQVTDLGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGEHNMWNKDEIVRASGKFELLDRLLPKLRRTGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGTLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFERMDEERRQKENYRSRLMEEHEVPDWVYSATVNKDDKVKSSAFGSVTGKRKRKEVVYADTLSDLQWMKAVENGEDVSRLPVKGRRRDHLPPDSNTIAGDNVQAEESFSELQNESFSMAKERSSEDSFHVNPGPAPKRLRQEVINTQKHEYEGVRGSVLNEHMFSWNTYRKKRSSSLAQSSSLSDSRGQSSMEEQIGADVPWLPIFTIAMKL 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0461 1139 SMART helicmild6 756 840 IPR001650 -
Prci4g0461 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 894 IPR027417 -
Prci4g0461 1139 SMART SnAC_2 933 995 IPR029295 GO:0042393
Prci4g0461 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 642 IPR027417 -
Prci4g0461 1139 MobiDBLite consensus disorder prediction 1011 1063 - -
Prci4g0461 1139 MobiDBLite consensus disorder prediction 55 77 - -
Prci4g0461 1139 Coils Coil 931 951 - -
Prci4g0461 1139 SMART ultradead3 413 606 IPR014001 -
Prci4g0461 1139 Gene3D - 386 641 IPR038718 -
Prci4g0461 1139 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 429 595 IPR014001 -
Prci4g0461 1139 MobiDBLite consensus disorder prediction 370 386 - -
Prci4g0461 1139 MobiDBLite consensus disorder prediction 334 387 - -
Prci4g0461 1139 Pfam Helicase conserved C-terminal domain 727 840 IPR001650 -
Prci4g0461 1139 MobiDBLite consensus disorder prediction 1102 1120 - -
Prci4g0461 1139 MobiDBLite consensus disorder prediction 1023 1045 - -
Prci4g0461 1139 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 730 897 IPR001650 -
Prci4g0461 1139 Coils Coil 211 241 - -
Prci4g0461 1139 FunFam Probable ATP-dependent DNA helicase CHR12 648 946 - -
Prci4g0461 1139 CDD SF2_C_SNF 718 851 - -
Prci4g0461 1139 Pfam Snf2-ATP coupling, chromatin remodelling complex 929 995 IPR029295 GO:0042393
Prci4g0461 1139 FunFam Chromatin structure-remodeling complex protein SYD 408 651 - -
Prci4g0461 1139 Gene3D - 648 947 IPR027417 -
Prci4g0461 1139 PANTHER SNF2/RAD54 HELICASE FAMILY 157 1037 - -
Prci4g0461 1139 MobiDBLite consensus disorder prediction 1102 1121 - -
Prci4g0461 1139 Pfam SNF2-related domain 420 708 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0461 Prci-Chr4 3169109 3178896 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0461 399 867 RAD5 or RAD16-like Gene Family AT1G02670 27.353 2.74e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci4g0461 SNF2_N 2.3e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0461 - - pcin:129308606 2218.74