Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0452 ATGCAGGTTGCTAAAGTTGCTAGGATATTGGTGGCAACTCCAACAGAGGTTGAGGAGGAGCACAATTCATGTACTGTCATGGCTCTTTTGGATGGCGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCGATGATAGTGGTAGCAACAGTGGGGAGTTTATGCCACATTATTGAAAGACAATTTCTTAAGCTTGAAACTGTGCGGGTGCTAGTAGTTGATGAGGTTGACTTTATTTTCAATTCTTCAACGCAAGTCAGTTCCCTTCGAAAGCTTTTAACTTTGTATTCATCATGCAATAACCGTCAAACGGTTTTTGCCAGTGCATCTATACCACAACACAGACGATTTCTTCATGATTGTGTGCAACAGAAATGGACTAAGAATGATGTGGTCCATATTCATGTCAGCCCAGTTGAGCCAATGCCATCACGCCTGCATCATAGATTTGTAGTATGTCACAGGAACAAGAAGCAACAAACCCTGTTATCTTTGATACAATATGATGCACCTAATTCTGGCATTATATTTGCTAATGAGCAGTCTGAGAAGTCAAAACGGGCAGGAAATGCTTCATCGACATCCCTTCTGATTGACTTTCTGAAGACTTCATATCAAGGTTCTTTAGATATCCTCCTCCTTGAGGAAGACATGAATTTCTATTCAAGAGCAGTTTCACTGTTGGAGGTAAGGAAAGGTGTCGGCTATCTTCTTGTAGCAACAGATATAGCTTCGAGAGGAGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGACCTGCCTAGGACTGCCATAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCCTTTTCTGACATGAAATGTACTGTTACCTCTATTATCGTTCCAGAGGAGCGGTTTGTTCTACAGAAGTATGAAAATGAGCTCATGTTCAATTGTGAAGAGCTTACTTTGTAA 957 0.4148 MQVAKVARILVATPTEVEEEHNSCTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIERQFLKLETVRVLVVDEVDFIFNSSTQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKNDVVHIHVSPVEPMPSRLHHRFVVCHRNKKQQTLLSLIQYDAPNSGIIFANEQSEKSKRAGNASSTSLLIDFLKTSYQGSLDILLLEEDMNFYSRAVSLLEVRKGVGYLLVATDIASRGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDMKCTVTSIIVPEERFVLQKYENELMFNCEELTL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0452 318 Pfam Helicase conserved C-terminal domain 162 280 IPR001650 -
Prci4g0452 318 CDD SF2_C_DEAD 149 280 - -
Prci4g0452 318 Pfam DEAD/DEAH box helicase 24 116 IPR011545 GO:0003676|GO:0005524
Prci4g0452 318 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 132 IPR014001 -
Prci4g0452 318 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 22 309 - -
Prci4g0452 318 SMART helicmild6 198 282 IPR001650 -
Prci4g0452 318 Gene3D - 1 129 IPR027417 -
Prci4g0452 318 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 161 318 IPR001650 -
Prci4g0452 318 Gene3D - 145 316 IPR027417 -
Prci4g0452 318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 305 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0452 Prci-Chr4 3085670 3093653 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0452 26 316 Eukaryotic Initiation Factors Gene Family AT5G11170 24.342 2.80e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0452 - - ahf:112763379 535.028