Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0450 ATGGATGCTCTTTCACCTGCAAAGCTTCTTCCCATTTCCTTGGAGAAGCTAACTCCTACTTGTTTTCTTTCTTACTCGCAAAATCATAACTTCAATTTTTTCTTTTCCATGTATCACTCCAACCCTGGTCTACGCCTTATCTCCAAGTTCAGAACTCCACAATCCCTTTTAAATACCTCTTCCTTGGTCCACGCAGCAGTTGATAAAGTTGGTTCTCCCACGTTAAGGGAAATATGCGAAGCTCGTGTTCCCCAGCATATATTAGACAGGATGGAGGAGATTGGATATGTATTGCCTACAGATGTCCAGAAACAAGCATTGCCTTCTCTTTTATCTGGTCGTGATTGTATCCTTCACGCTCAGACAGGTTCTGGGAAGACACTTGCATACCTGCTTCTTATATATTCCATAGTAAATACTGCAAAATCTGTTGTGCAAGCTCTTGTTGTGGTTCCCACCCGTGAACTTGGCATGCAGGTTGCTAAAGTTGCTAGGATATTGGTGGCAACTCCAACAGAGGTTGAGGAGGAGCACAATTCATGTACTGTCATGGCTCTTTTGGATGGCGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCGATGATAGTGGTAGCAACAGTGGGGAGTTTATGCCACATTATTGAAAGACAATTTCTTAAGCTTGAAACTGTGCGGGTGCTAGTAGTTGATGAGGTTGACTTTATTTTCAATTCTTCAACGCAAGTCAGTTCCCTTCGAAAGCTTTTAACTTTGTATTCATCATGCAATAACCGTCAAACGGTTTTTGCCAGTGCATCTATACCACAACACAGACGATTTCTTCATGATTGTGTGCAACAGAAATGGACTAAGAATGATGTGGTCCATATTCATGTCAGCCCAGTTGAGCCAATGCCATCACGCCTGCATCATAGATTTGTAGTATGTCACAGGAACAAGAAGCAACAAACCCTGTTATCTTTGATACAATATGATGCACCTAATTCTGGCATTATATTTGCTAATGAGCAGTCTGAGAAGTCAAAACGGGCAGGAAATGCTTCATCGACATCCCTTCTGATTGACTTTCTGAAGACTTCATATCAAGGTTCTTTAGATATCCTCCTCCTTGAGGAAGACATGAATTTCTATTCAAGAGCAGTTTCACTGTTGGAGGTAAGGAAAGGTGTCGGCTATCTTCTTGTAGCAACAGATATAGCTTCGAGAGGAGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGACCTGCCTAGGACTGCCATAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCCTTTTCTGACATGAAATGTACTGTTACCTCTATTATCGTTCCAGAGGAGCGGTTTGTTCTACAGAAGTATGAAAATGAGCTCATGTTCAATTGTGAAGAGCTTACTTTGTAA 1428 0.4188 MDALSPAKLLPISLEKLTPTCFLSYSQNHNFNFFFSMYHSNPGLRLISKFRTPQSLLNTSSLVHAAVDKVGSPTLREICEARVPQHILDRMEEIGYVLPTDVQKQALPSLLSGRDCILHAQTGSGKTLAYLLLIYSIVNTAKSVVQALVVVPTRELGMQVAKVARILVATPTEVEEEHNSCTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIERQFLKLETVRVLVVDEVDFIFNSSTQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKNDVVHIHVSPVEPMPSRLHHRFVVCHRNKKQQTLLSLIQYDAPNSGIIFANEQSEKSKRAGNASSTSLLIDFLKTSYQGSLDILLLEEDMNFYSRAVSLLEVRKGVGYLLVATDIASRGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDMKCTVTSIIVPEERFVLQKYENELMFNCEELTL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0450 475 Gene3D - 302 473 IPR027417 -
Prci4g0450 475 CDD DEADc 87 282 - -
Prci4g0450 475 SMART helicmild6 355 439 IPR001650 -
Prci4g0450 475 Pfam DEAD/DEAH box helicase 100 273 IPR011545 GO:0003676|GO:0005524
Prci4g0450 475 Gene3D - 56 287 IPR027417 -
Prci4g0450 475 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 289 IPR014001 -
Prci4g0450 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 441 IPR027417 -
Prci4g0450 475 CDD SF2_C_DEAD 306 437 - -
Prci4g0450 475 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 475 IPR001650 -
Prci4g0450 475 SMART ultradead3 95 309 IPR014001 -
Prci4g0450 475 Pfam Helicase conserved C-terminal domain 320 437 IPR001650 -
Prci4g0450 475 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 75 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0450 Prci-Chr4 3085291 3093682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0450 95 464 Eukaryotic Initiation Factors Gene Family AT1G72730 26.178 1.97e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0450 - - gmx:100786205 681.404