Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0448 ATGGATGCTCTTTCACCTGCAAAGCTTCTTCCCATTTCCTTGGAGAAGCTAACTCCTACTTGTTTTCTTTCTTACTCGCAAAATCATAACTTCAATTTTTTCTTTTCCATGTATCACTCCAACCCTGGTCTACGCCTTATCTCCAAGTTCAGAACTCCACAATCCCTTTTAAATACCTCTTCCTTGGTCCACGCAGCAGTTGATAAAGTTGGTTCTCCCACGTTAAGGGAAATATGCGAAGCTCGTGTTCCCCAGCATATATTAGACAGGATGGAGGAGATTGGATATGTATTGCCTACAGATGTCCAGAAACAAGCATTGCCTTCTCTTTTATCTGGTCGTGATTGTATCCTTCACGCTCAGACAGGTTCTGGGAAGACACTTGCATACCTGCTTCTTATATATTCCATAGTAAATACTGCAAAATCTGTTGTGCAAGCTCTTGTTGTGGTTCCCACCCGTGAACTTGGCATGCAGGTTGCTAAAGTTGCTAGGATATTGGTGGCAACTCCAACAGAGGTTGAGGAGGAGCACAATTCATGTACTGTCATGGCTCTTTTGGATGGCGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCGATGATAGTGGTAGCAACAGTGGGGAGTTTATGCCACATTATTGAAAGACAATTTCTTAAGCTTGAAACTGTGCGGGTGCTAGTAGTTGATGAGGTTGACTTTATTTTCAATTCTTCAACGCAAGTCAGTTCCCTTCGAAAGCTTTTAACTTTGTATTCATCATGCAATAACCGTCAAACGGTTTTTGCCAGTGCATCTATACCACAACACAGACGATTTCTTCATGATTGTGTGCAACAGAAATGGACTAAGAATGATGTGGTCCATATTCATGTCAGCCCAGTTGAGCCAATGCCATCACGCCTGCATCATAGATTTGTAGTATGTCACAGGAACAAGAAGCAACAAACCCTGTTATCTTTGATACAATATGATGCACCTAATTCTGGCATTATATTTGCTAATGAGCAGTCTGAGAAGTCAAAACGGGCAGGAAATGCTTCATCGACATCCCTTCTGATTGACTTTCTGAAGACTTCATATCAAGGTTCTTTAGATATCCTCCTCCTTGAGGAAGACATGAATTTCTATTCAAGAGCAGTTTCACTGTTGGAGGTAAGGAAAGGTGTCGGCTATCTTCTTGTAGCAACAGATATAGCTTCGAGAGGAGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGACCTGCCTAGGACTGCCATAGATTATCTTCATCGGGCAGGTCCACGCACGTTAATAAGATAG 1320 0.4227 MDALSPAKLLPISLEKLTPTCFLSYSQNHNFNFFFSMYHSNPGLRLISKFRTPQSLLNTSSLVHAAVDKVGSPTLREICEARVPQHILDRMEEIGYVLPTDVQKQALPSLLSGRDCILHAQTGSGKTLAYLLLIYSIVNTAKSVVQALVVVPTRELGMQVAKVARILVATPTEVEEEHNSCTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIERQFLKLETVRVLVVDEVDFIFNSSTQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKNDVVHIHVSPVEPMPSRLHHRFVVCHRNKKQQTLLSLIQYDAPNSGIIFANEQSEKSKRAGNASSTSLLIDFLKTSYQGSLDILLLEEDMNFYSRAVSLLEVRKGVGYLLVATDIASRGVDLPEMSHIYNFDLPRTAIDYLHRAGPRTLIR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0448 439 CDD DEADc 87 282 - -
Prci4g0448 439 SMART helicmild6 355 437 IPR001650 -
Prci4g0448 439 Pfam DEAD/DEAH box helicase 100 273 IPR011545 GO:0003676|GO:0005524
Prci4g0448 439 Gene3D - 56 287 IPR027417 -
Prci4g0448 439 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 439 IPR001650 -
Prci4g0448 439 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 75 433 - -
Prci4g0448 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 433 IPR027417 -
Prci4g0448 439 Gene3D - 302 436 IPR027417 -
Prci4g0448 439 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 289 IPR014001 -
Prci4g0448 439 Pfam Helicase conserved C-terminal domain 320 433 IPR001650 -
Prci4g0448 439 SMART ultradead3 95 309 IPR014001 -
Prci4g0448 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 275 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0448 Prci-Chr4 3085290 3093653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0448 83 433 Eukaryotic Initiation Factors Gene Family AT3G19760 25.562 9.37e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0448 - - gmx:100786205 604.749