Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0447 ATGGATAATTTCACCTCTTCCTCTTCTCTTCCCCCTCCCCCTTCCCCACCCCCTCTATCCGACATTTTGCCTACATCGGCTTCACCCTCTTCTGCAGTTTTCGACGATGGTTCCGAGGACTCCTGCAGTATTTGTCTAGAGCCCTTCAGCACCGATGACCCTGCTACTATAACAAATTGCAAACATGAATATCATCTGCACTGTATTCTTGAATGGTCTCAGAGAAGCAAGGAGTGCCCAATCTGTTGGCAGTTACTTGTCTTGAAAGACCCTGCCAACCAAGAGCTTCTAGCTGCAGTGGAAGCTGAAAAACGCATAAGGTCAAGAAGCTCATATTCGTCTGCATTCCCATATCCTCATATCCCCATTGAAAGGCTTAGCGCTGAACATGATGATTCTTGTTCAGATGACTCTGATTTTGATGAACAAATTATGCAGCACCTAGTTGCTGCTGCAAGTAGAGCACATTATTTTCGTAGAAGGGAAATGCAAAGATCATCTGGAGTAGGTCCATCTCGGGTTCCTGTTGTTGACTCTTCTGTGCAAGTCTCTGAGCTGCATCCAGCGCATACAACTTCACGTTCTGGAGGTAGTTCACCTAGTTCTGGTTCTGCTGCGGACATTCAACCACCACCATCTGCCCCTTCCTCTGTTGAAGCAATTGCAAGAAATTCCACTCCTGAAACCGATGACCCTTTCAAAGCCAGAGTTCTTTATAGCCAGCCGCCACCATCTGAGAGTGTGAGAAGACTGAACACTTCTGAGATGTTTACCTTCCCTGAGACCATCAAGACCAAATTTTCTGCTGCTTCAGCTAGATATAAAGAATCTATCTCAAAAAGTACACGCGGCCTTAAAGAGAAGTTACTTGCCCGCAATGCTTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGTATTGCTGGTGTTGCACGGATGATTGAACGTCTTGATCTTGCCTCAAAACGGGCTGCTGCTTCTCCTCCCATGCCTAGCTCTAGTGAGGGAACTTCTGGCTTCCCCTTTAAAGGAAAGACTGTACAAGAAAATGGTAGTGGACAGTCTCTTCACTGTGCTGTTAAGGAAGAGAGCGGAGTTGCCATTCATGATGGTAGATCAGGTCTACCTGCACAGGTTTCCAGCACGGCTGTCAGTCCAGTAGGATATCCTCCTCATGTTCAGACTGGACATGATGCGGTAAAGACTTAG 1221 0.4668 MDNFTSSSSLPPPPSPPPLSDILPTSASPSSAVFDDGSEDSCSICLEPFSTDDPATITNCKHEYHLHCILEWSQRSKECPICWQLLVLKDPANQELLAAVEAEKRIRSRSSYSSAFPYPHIPIERLSAEHDDSCSDDSDFDEQIMQHLVAAASRAHYFRRREMQRSSGVGPSRVPVVDSSVQVSELHPAHTTSRSGGSSPSSGSAADIQPPPSAPSSVEAIARNSTPETDDPFKARVLYSQPPPSESVRRLNTSEMFTFPETIKTKFSAASARYKESISKSTRGLKEKLLARNASVKELSKGVQREMNAGIAGVARMIERLDLASKRAAASPPMPSSSEGTSGFPFKGKTVQENGSGQSLHCAVKEESGVAIHDGRSGLPAQVSSTAVSPVGYPPHVQTGHDAVKT 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0447 406 FunFam E3 ubiquitin-protein ligase RHF1A 27 94 - -
Prci4g0447 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 98 IPR013083 -
Prci4g0447 406 MobiDBLite consensus disorder prediction 9 23 - -
Prci4g0447 406 SMART ring_2 42 82 IPR001841 -
Prci4g0447 406 ProSiteProfiles Zinc finger RING-type profile. 42 82 IPR001841 -
Prci4g0447 406 MobiDBLite consensus disorder prediction 374 406 - -
Prci4g0447 406 MobiDBLite consensus disorder prediction 329 358 - -
Prci4g0447 406 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 16 91 - -
Prci4g0447 406 Pfam Ring finger domain 40 82 IPR001841 -
Prci4g0447 406 SUPERFAMILY RING/U-box 37 89 - -
Prci4g0447 406 MobiDBLite consensus disorder prediction 1 36 - -
Prci4g0447 406 MobiDBLite consensus disorder prediction 331 358 - -
Prci4g0447 406 MobiDBLite consensus disorder prediction 184 211 - -
Prci4g0447 406 MobiDBLite consensus disorder prediction 163 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0447 Prci-Chr4 3079714 3083367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0447 33 93 C3H Transcription Factor Family AT4G00335 44.262 9.42e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0447 K19043 - qsa:O6P43_021605 416.001