Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0417 ATGTCTCATATAACTGTCGAGAGGAACAGAAGAAGACAGATGAACGAACATCTCAAAGTTCTGAGATCATTGACCCCCCGTTTCTATATCAAGAGGGGAGACCAAGCATCTATAATAGGGGGCGTGATCGAATTCATCAAGGAGTTACACCAAGTTGTTGAAGCGTTGGAGTCCAAGAAAAGGAGAAAGAGTCTAAGCCCTAGCCCTCGTGGCGCTACTCCATTAATAAATCTTGATCATCGAGTTGATAGTCCCTCGGGAATCGGAATTGGGTCTGCCGACTCATTCAAGGAATCCGGAGGAACAGTTAGCTGTAATTCATCAGTTGCTGACGTGGAACTCAAAATCTCAGGCTCCAATGTCATACTCAGACTGATTTCACATAGGATTCCGGGTCAACTTGCCAAGATAATAGCTGTTCTGGAAAGCCTTTCTTTTCAAGTTCTTCATCTCAACATCGGCAGCATGCAGGATATGGTTCTCCACCACTTTGTTCTCAAGATAGGACTGGATTGTCAAATAAGCCTGGAGGAACTGGCAACGGAAGTGCGGCGAAGCTTCTGCCCTGACGCTGTTTGCAGTACTGCAGCAATGTATCGCTTAAGAAGAGACTCCATTTAA 621 0.4541 MSHITVERNRRRQMNEHLKVLRSLTPRFYIKRGDQASIIGGVIEFIKELHQVVEALESKKRRKSLSPSPRGATPLINLDHRVDSPSGIGIGSADSFKESGGTVSCNSSVADVELKISGSNVILRLISHRIPGQLAKIIAVLESLSFQVLHLNIGSMQDMVLHHFVLKIGLDCQISLEELATEVRRSFCPDAVCSTAAMYRLRRDSI 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0417 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 65 IPR036638 GO:0046983
Prci4g0417 206 PANTHER TRANSCRIPTION FACTOR FAMA 1 187 IPR044283 GO:0003700|GO:0010052
Prci4g0417 206 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Prci4g0417 206 Gene3D - 1 64 IPR036638 GO:0046983
Prci4g0417 206 FunFam Transcription factor MUTE 1 66 - -
Prci4g0417 206 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Prci4g0417 206 SMART finulus 4 55 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0417 Prci-Chr4 3002552 3004820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0417 1 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 61.463 3.11e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci4g0417 HLH 7.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0417 - - pcin:129310160 396.356