Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0415 ATGGGAAATTTGTGGAGTAGCAGAAGAAGAAACAACTATTTTCCCCCACCCCCTCCCCCTCATCTACCACCTCCTTATTATTATTCTGCAGAATCCCATCTTCCTGCCCCTCCTCCCCTGCCACCTCAACCGCAAGGCTATTATCTGACCAATTCTTACGTCAATACTCCTCCTCTGCCTCCGCCGCCACCTCCGCCGTCTCATCCTCACACCCATTCATTCAGTTACTCAAATGGCCATAACTATTGCCCCAACTATGGCAATTCTGTGACGGGTCGTTTTCAATACCAACCTTATTATGTAAATCAGGGTACTGGTGGGTGGCCTCCGATTCGTCCTCCTCTTGCTCCCGCCAATCCCCCACCTCCCTATGTCGATCACCAAACCGCTAAGAAGGTCAAAAATGATGTCAATGTGCATAAAGATACCTTGCGGCTTGAGTTGGATGAGCACAACCCTGACCAGCACCTGGTTTCTTTTGTTTTCGATGCCTTATATGATGGAAGCATTTCTATAATCTACTTTGCCAAGGAAGTAGAAACATGCAAGTTCAGTCCAACGATTCCTGAAATTGAGCCGGTCAGAATCCCTTTTCAGAAAGGAGCTGGACAAAAGTTTTGTCAGCCTTCAGGAACTGGCATTGACTTAGGTTTCTTTGAGTTGGATGTTCTCTCAAAACCCTCACAAGAGGATGTCTTTCCCCTTGTGGTATGTGCTGAAACATATTCGAGAACTCCTCCAGCAGATGAAAACTTAGGAGATTTTATGGCTGATATATCACCTAACAAGCAGATTACTCAAGCTGTTATAGAGAAAAGCAATGGTAGTGATTGTTTCCAGGTAAAAGTAATTAGGCAGATTTTGTGGATTGATGGTGCCCGTTATGAATTAAGAGAGATCTATGGAATTGGAAGCTCATCTGCAGCAGATTTCAATGACAATGATCCTGAGAAGGAGGAGTGTGTGATATGCATGACTGAACCAAAGGACACTGCTGTCTTACCTTGTCGTCATATGTGTATGTGCAGTGAGTGTGCCAAAGCTTTGAGGCTTCAATCGAATAAATGCCCTATATGCCGTCAATCCATTGAGGAACTTATAGAGATCAAGATAAATAATGGTAACTAA 1128 0.4424 MGNLWSSRRRNNYFPPPPPPHLPPPYYYSAESHLPAPPPLPPQPQGYYLTNSYVNTPPLPPPPPPPSHPHTHSFSYSNGHNYCPNYGNSVTGRFQYQPYYVNQGTGGWPPIRPPLAPANPPPPYVDHQTAKKVKNDVNVHKDTLRLELDEHNPDQHLVSFVFDALYDGSISIIYFAKEVETCKFSPTIPEIEPVRIPFQKGAGQKFCQPSGTGIDLGFFELDVLSKPSQEDVFPLVVCAETYSRTPPADENLGDFMADISPNKQITQAVIEKSNGSDCFQVKVIRQILWIDGARYELREIYGIGSSSAADFNDNDPEKEECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELIEIKINNGN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0415 375 SMART ring_2 321 359 IPR001841 -
Prci4g0415 375 ProSiteProfiles Zinc finger RING-type profile. 321 360 IPR001841 -
Prci4g0415 375 MobiDBLite consensus disorder prediction 55 70 - -
Prci4g0415 375 CDD mRING-HC-C3HC5_MGRN1-like 320 360 IPR045195 -
Prci4g0415 375 PANTHER MAHOGUNIN 1 370 IPR045194 GO:0061630
Prci4g0415 375 FunFam probable E3 ubiquitin-protein ligase LOG2 304 370 - -
Prci4g0415 375 MobiDBLite consensus disorder prediction 25 73 - -
Prci4g0415 375 MobiDBLite consensus disorder prediction 25 45 - -
Prci4g0415 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 374 IPR013083 -
Prci4g0415 375 SUPERFAMILY RING/U-box 315 366 - -
Prci4g0415 375 Pfam Zinc finger, C3HC4 type (RING finger) 318 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0415 Prci-Chr4 2963210 2968020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0415 51 375 C3H Transcription Factor Family AT3G06140 51.786 5.62e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0415 - - qsa:O6P43_021626 494.582