Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0345 ATGGAAACACAAGGTCCTTCTACTCCTACTTCAACCAAATCGCCGCAGCAGCAGCTGTCCCCGCCACCATCGGTCCTCGATAGGCCACCGGGGGATTCTGAGATGGAGGCGCAACATCATTTGTCGGAAGACTCTTCATCTGTTTGGGACCTGGACTGCCTTTTGGATTTTAGCTTGGACGAGAATTTAGCTCTCTCCTTTGACGATTATCCCCCTCATTCAGATGTTCTTCAAAATCCGGCGCTTCCTCCTCAAGAGATTCCCAGTTCCGAGAAGGTTCGGAAGCGAGACCCCAGGCTGACTTGTTCCAATTACCTGGCCGGTCGGGTCCCATGTGCATGCCCGGAGGTCGATGCTAAGCTCGAGGAAGAAGGTTTGCCTGGTAAGAAGCGCGCTCGCACCGTCCGGGCATCGGCTGGAATTGCACGGTGCCAGGTACCTGGGTGCGAGGCAGATATTAGTGAGCTCAAAGGGTATCATCGAAGGCACAGGGTTTGCCTGCGTTGCGCGAACGCTAGTACAGTTATACTTGATGGGGACGCTAAGAGATACTGCCAGCAGTGTGGAAAGTTTCACATCTTACCAGATTTTGATGAAGGTAAACGAAGCTGTCGAAGAAAATTAGAGCGCCACAACAACCGAAGGCGTAGAAAGCCTACAGAAACCAGAGCTGCAGAAGATCAAGAAGTTCAACCTGTTAAACAGGCTGAGGTTGATGCGGGAAAAGATAGTTCCCATATAAGCAGTGAGATAAACGAAATAGAAACTGCTCTGGAGCATGAAGATGGACAATTTACTACGCCATGTTCAGCTCCTGATACCCTGAACACTAAAAATGATAATTTTGTGTCCTATGTTGCTTACGGTGATACACAAGTGAATGGTAGAAAAGAGAATTCTGATATTTCTTATTCACCATCATATTGTGACAAGAGTGCTTACTCATCCATGTGCCCAACAGGTCGGGTATCTTTTAAGCTTTATGATTGGAATCCTGCGGAGTTTCCCAGAAGGCTACGACATCAAATATTCCAATGGTTGGCCAGTATGCCTGTTGAGCTGGAGGGTTATATCCGCCCTGGGTGTACAATCCTGACAGTTTTTGTTGCTATGCCTAGATTTATGTGGACAAATTTACTTGAAGACCCTCTATATTATGTTCAAGACCTAGTAGCTCCAAGAAAGATGCTATCTGGAAGAGGCACTGCACTTGTTCATCTAAATGACATGATCTTCCGCATTTTGAAAGATGAAACTTCTGTGATGGAAGTTCAGATAAAGGTGCACGCACCAAGGCTTCACTATGTTCATCCTACATACTTTGAGGCTGGAAAACCTATGGAATTTGTTGCTTGTGGAAGTAACTTGAAGCAGCCTAAGTTTCGGCTTCTTGTATCTTTTTCAGGAAAGTATTTAAAGTACGAATATTGTGTTGCATCTCCTCATAACTGGGCAGGAGATGGCATTTCTTGTGCTTTTGACAGTCAGTTGTACAAGATTTACGTCCCTCATACAGAACCAAACATATTTGGACCTGCATTTATTGAGGTGGAGAATGAGTCTGGTTTATCAAACTTCATTCCTGTACTCATTGGGGACGCAGAAATCTGCTCTGAATTTGAGACATTGCAGCAAAAACCAGACGTATCTCTTCTTTCAAAACAAATGCAGGCTGCATCTGGCGGTTCTATTTGCAGCTTCTGTGAAGCTTTTGCACTGAGACATACAGCATACTCAGACTTGCTGTTAGATATAGCATGGCTGCTTAAGGATCCTACTTCAGAAGATTTTCATAGAGCTATGACATCTTCACAAATTCAAAGATTTTGTTATTTGATAGACTTTCTGATGTGCAATGACTTAGTTGTCATTTTGGGGAAAATATTAGGGAATTTGAATATTTTGACAGACAATATGGAAACCAACAATGTGATTAACAGAATGAGTGAGGTTGACTTGACATTACTACTGAAACATACCTGTCAAGCTAGAGAATTCCTTCATCAGAAACATCGGAGAGGTGGAGATTTTGTCGTGTACTCTGTTTTTTCTGAAATGCATGGACATAAAGTTGCTCCAAGCTGCTATCAAGATAACATTCCGTCAGTTGTTAAAATCAGCAATCAGGGTGGCGGGTCAAGAGCAGATGCGAAGTTGAAAGTACTGAGAAGTCCAGCAGGTGACTACGACAGAAGTGGAAGGATACCACTTTTGGGGGGTGATATCATAATGAACATGGAAGAGTCGCCTCAAAGATCTGGTTATCGACATCTTGTGAGGGGATTCTTGAGCTCGCGGCCGGCCATTCTCATGATTGCTTCAGTTGCTGTGTGTCTTGGGCTTTGCGCAGCCCTCCTTCATCCTGGGAGGGTTGGTGAGTTTGCAGTATCCATTAGAAGGTGCTTGTTCAGCAATTCGTAG 2421 0.4449 METQGPSTPTSTKSPQQQLSPPPSVLDRPPGDSEMEAQHHLSEDSSSVWDLDCLLDFSLDENLALSFDDYPPHSDVLQNPALPPQEIPSSEKVRKRDPRLTCSNYLAGRVPCACPEVDAKLEEEGLPGKKRARTVRASAGIARCQVPGCEADISELKGYHRRHRVCLRCANASTVILDGDAKRYCQQCGKFHILPDFDEGKRSCRRKLERHNNRRRRKPTETRAAEDQEVQPVKQAEVDAGKDSSHISSEINEIETALEHEDGQFTTPCSAPDTLNTKNDNFVSYVAYGDTQVNGRKENSDISYSPSYCDKSAYSSMCPTGRVSFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTVFVAMPRFMWTNLLEDPLYYVQDLVAPRKMLSGRGTALVHLNDMIFRILKDETSVMEVQIKVHAPRLHYVHPTYFEAGKPMEFVACGSNLKQPKFRLLVSFSGKYLKYEYCVASPHNWAGDGISCAFDSQLYKIYVPHTEPNIFGPAFIEVENESGLSNFIPVLIGDAEICSEFETLQQKPDVSLLSKQMQAASGGSICSFCEAFALRHTAYSDLLLDIAWLLKDPTSEDFHRAMTSSQIQRFCYLIDFLMCNDLVVILGKILGNLNILTDNMETNNVINRMSEVDLTLLLKHTCQAREFLHQKHRRGGDFVVYSVFSEMHGHKVAPSCYQDNIPSVVKISNQGGGSRADAKLKVLRSPAGDYDRSGRIPLLGGDIIMNMEESPQRSGYRHLVRGFLSSRPAILMIASVAVCLGLCAALLHPGRVGEFAVSIRRCLFSNS 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0345 806 MobiDBLite consensus disorder prediction 1 21 - -
Prci4g0345 806 ProSiteProfiles Zinc finger SBP-type profile. 141 218 IPR004333 GO:0003677
Prci4g0345 806 Pfam SBP domain 144 218 IPR004333 GO:0003677
Prci4g0345 806 MobiDBLite consensus disorder prediction 75 94 - -
Prci4g0345 806 Gene3D - 140 205 IPR036893 GO:0003677|GO:0005634
Prci4g0345 806 MobiDBLite consensus disorder prediction 208 247 - -
Prci4g0345 806 MobiDBLite consensus disorder prediction 1 44 - -
Prci4g0345 806 MobiDBLite consensus disorder prediction 219 233 - -
Prci4g0345 806 SUPERFAMILY SBT domain 142 222 IPR036893 GO:0003677|GO:0005634
Prci4g0345 806 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 56 630 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0345 Prci-Chr4 2478068 2487348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0345 16 804 SBP-box Gene Family AT5G18830 45.455 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci4g0345 SBP 1.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0345 - - pcin:129308496 1600.1