Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0344 ATGGCGAGATACCGAAGCCGGAGCAGAAGCTACAGCCCACGCCGGAGAAGCAGAACCCCACCGCGTGGACGCAAGCGGTACGACGATGAACCTCGTGATCGCTACCGTGACAGCAGGTCCTACAGGGACCGCCGCTCTCCTGCTCCTTCAGGCTTGCTTGTCCGTAATCTTCCGCTAGATGCTAGGCCTGAAGATCTTAGGGGCCCCTTTGAGCGCTATGGCCCTGTGAAAGACGTATATCTTCCTAAGAATTACTACACTGGTGAGCCCCGGGGCTTTGGCTTTGTGAAATTCCGGTATGCTGAGGATGCTGCTGAAGCAAAGCAACAACTTAATCATACTGTTATTGGTGGACGTGAAATAAGAATTGTGTATGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCGTACAAATGCTCGTGTAAGTGGTCGTTATGGAGGAAATGGTAGGAGGAGAACTCCCACAAGGTCCCCAAGGCGCCGATATCGATCCTACTCAAGGTCTCTATCACCAGCTGAGGATCACACAAGGGATCATAGGGACAGGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTCCAGGTCTCCTTCACCTCGTGCAAGGAAGGGTTACAGGAGGTCCCCAACTCCGAGGGAGAATGGTCGGAGTCCTGATGACAGGAGGGATCATTCGCGGAGTAGATCAGAGAGTCCCAGGGGTAATGGTGGCAGTCCCTCAGGGTCTCGTTCACGGTCGTACAGTCCTCGTTGA 759 0.5231 MARYRSRSRSYSPRRRSRTPPRGRKRYDDEPRDRYRDSRSYRDRRSPAPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQQLNHTVIGGREIRIVYAEENRKTPQEMRTNARVSGRYGGNGRRRTPTRSPRRRYRSYSRSLSPAEDHTRDHRDRDDYYSPERSRSYSRSPSPRARKGYRRSPTPRENGRSPDDRRDHSRSRSESPRGNGGSPSGSRSRSYSPR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0344 252 SUPERFAMILY RNA-binding domain, RBD 47 154 IPR035979 GO:0003676
Prci4g0344 252 MobiDBLite consensus disorder prediction 167 191 - -
Prci4g0344 252 MobiDBLite consensus disorder prediction 22 44 - -
Prci4g0344 252 Gene3D - 2 141 IPR012677 -
Prci4g0344 252 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 142 - -
Prci4g0344 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Prci4g0344 252 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 46 250 - -
Prci4g0344 252 SMART rrm2_1 51 124 IPR003954 GO:0003676
Prci4g0344 252 SMART rrm1_1 51 124 IPR000504 GO:0003723
Prci4g0344 252 MobiDBLite consensus disorder prediction 233 252 - -
Prci4g0344 252 MobiDBLite consensus disorder prediction 129 252 - -
Prci4g0344 252 MobiDBLite consensus disorder prediction 1 21 - -
Prci4g0344 252 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Prci4g0344 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 122 IPR000504 GO:0003723
Prci4g0344 252 MobiDBLite consensus disorder prediction 208 232 - -
Prci4g0344 252 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0344 Prci-Chr4 2461102 2466299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0344 43 181 Eukaryotic Initiation Factors Gene Family AT2G36660 26.573 1.58e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0344 K12900 - cave:132183604 248.44