Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0340 ATGCAAGCGACTCAGGCTGCCACGAATGAAACTTCTGATAATTCACAAAAGACTGACCTTCAGCTAAACAAAGAAGTGTCGGATAATGGACCAAGTGGGAGGCGGCCAGATATTTCACTTCAAATCCCACCTAGACATTTAGGGCTTGGAAGTACACGTGGTGTAAGGTCTCTGGACCATTCTCAAAGTTTCTCTAAAGTGATTCCATCGCCACGAGGCTTTTTGCGGGCGCTGAGCCTCAAAAGGAAAGGCAAAACAGGAGAGGCTGAAAGAAGCAGCCTCCTGTATTCAGATCCCAAGGCAGCTCCGGACAGTCCAAATACGGCCAACTTTACATCTGCAGTTTCATGGACAAGATGCACTTCTCTTCCTGTGACACCTGCTACAAATCTGTCCCCTTCAATTTCTACACCTGCATCTGCAAGGACATACAGCGAACAGCCTAAACACCATAAAGCTCCTGCTGCTTCAGGTTCCAAGGTTTCAAGGTCCCTCTCTGTGCCTGGGCGGAATATGGTTATTGTAAGATCTTTGTCTTTCGCTGCCCATAGTGAGCATGCACAGCAAGATCAGAATGATGATCAAATAACTCCTGTGCCAGTGGAAGATGCTGATGAAGAAATTCCTGAAGAGGAAGCAGTTTGCCGAATCTGTTATGATGTCTGTGATGAAAGGAACACCCTCAAATTAGAGTGCAGTTGTAAGGGCGACTTAACACTTGTTCATGAAGAATGTGCAATTAAATGGTTTACCACAAAAGGAAATAAGAAATGTGATGTTTGTTGTCAAGAGGTTCAGAATTTACCTGTAACATTGCTTCGTTTGCCGAGCTCTGCTCAGACAGGAAGGAGACAGGTGCAGGGTGAGCAGAGCATGCATCCTGAGACAATAAGTGCTTGGCAAGACTTTGTGGTGCTTGTCCTAATAAGCACAATATGCTATTTTTTCTTCCTCGAGCAGCTACTGCTTCCTGACATGAAGACTCAAGCAATCATTATAGCAGCGCCATTTGCTTTTACCTTGGGTCTCCTGGCATCCATTTTTGCAGTCATCCTTGCAATAAAAGAGTATATATGGACATATGCTGCTCTCGAGTTTGCTCTTGTGGCTATAACCGTGCACCTGTTCTATACTATGGTACATTTGAAGGCCATATATGCAATACTGCTTTCATCAGTTCTGGGTTTTGGTATGGCTATGAGCATCAACTATGCATATATCCAGTATGTTTCTTGGCGTCTTCAAGTTCCCCAGGATGCCAACCCAGTATGA 1272 0.4473 MQATQAATNETSDNSQKTDLQLNKEVSDNGPSGRRPDISLQIPPRHLGLGSTRGVRSLDHSQSFSKVIPSPRGFLRALSLKRKGKTGEAERSSLLYSDPKAAPDSPNTANFTSAVSWTRCTSLPVTPATNLSPSISTPASARTYSEQPKHHKAPAASGSKVSRSLSVPGRNMVIVRSLSFAAHSEHAQQDQNDDQITPVPVEDADEEIPEEEAVCRICYDVCDERNTLKLECSCKGDLTLVHEECAIKWFTTKGNKKCDVCCQEVQNLPVTLLRLPSSAQTGRRQVQGEQSMHPETISAWQDFVVLVLISTICYFFFLEQLLLPDMKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVAITVHLFYTMVHLKAIYAILLSSVLGFGMAMSINYAYIQYVSWRLQVPQDANPV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0340 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 269 IPR013083 -
Prci4g0340 423 CDD RING_CH-C4HC3_MARCH 215 261 - -
Prci4g0340 423 MobiDBLite consensus disorder prediction 127 144 - -
Prci4g0340 423 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Prci4g0340 423 MobiDBLite consensus disorder prediction 1 54 - -
Prci4g0340 423 SUPERFAMILY RING/U-box 211 265 - -
Prci4g0340 423 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Prci4g0340 423 MobiDBLite consensus disorder prediction 127 163 - -
Prci4g0340 423 MobiDBLite consensus disorder prediction 1 28 - -
Prci4g0340 423 PANTHER OS02G0165000 PROTEIN 32 418 - -
Prci4g0340 423 SMART ringv_2 214 262 IPR011016 GO:0008270
Prci4g0340 423 MobiDBLite consensus disorder prediction 82 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0340 Prci-Chr4 2431871 2436541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0340 200 322 C3H Transcription Factor Family AT2G37950 28.788 3.32e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0340 - - gmx:100527094 613.609