Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0339 ATGCAAGCGACTCAGGCTGCCACGAATGAAACTTCTGATAATTCACAAAAGTTGCAGACTGACCTTCAGCTAAACAAAGAAGTGTCGGATAATGGACCAAGTGGGAGGCGGCCAGATATTTCACTTCAAATCCCACCTAGACATTTAGGGCTTGGAAGTACACGTGGTGTAAGGTCTCTGGACCATTCTCAAAGTTTCTCTAAAGTGATTCCATCGCCACGAGGCTTTTTGCGGGCGCTGAGCCTCAAAAGGAAAGGCAAAACAGGAGAGGCTGAAAGAAGCAGCCTCCTGTATTCAGATCCCAAGGCAGCTCCGGACAGTCCAAATACGGCCAACTTTACATCTGCAGTTTCATGGACAAGATGCACTTCTCTTCCTGTGACACCTGCTACAAATCTGTCCCCTTCAATTTCTACACCTGCATCTGCAAGGACATACAGCGAACAGCCTAAACACCATAAAGCTCCTGCTGCTTCAGGTTCCAAGGTTTCAAGGTCCCTCTCTGTGCCTGGGCGGAATATGGTTATTGTAAGATCTTTGTCTTTCGCTGCCCATAGTGAGCATGCACAGCAAGATCAGAATGATGATCAAATAACTCCTGTGCCAGTGGAAGATGCTGATGAAGAAATTCCTGAAGAGGAAGCAGTTTGCCGAATCTGTTATGATGTCTGTGATGAAAGGAACACCCTCAAATTAGAGTGCAGTTGTAAGGGCGACTTAACACTTGTTCATGAAGAATGTGCAATTAAATGGTTTACCACAAAAGGAAATAAGAAATGTGATGTTTGTTGTCAAGAGGTTCAGAATTTACCTGTAACATTGCTTCGTTTGCCGAGCTCTGCTCAGACAGGAAGGAGACAGGTGCAGGGTGAGCAGAGCATGCATCCTGAGACAATAAGTGCTTGGCAAGACTTTGTGGTGCTTGTCCTAATAAGCACAATATGCTATTTTTTCTTCCTCGAGCAGCTACTGCTTCCTGACATGAAGACTCAAGCAATCATTATAGCAGCGCCATTTGCTTTTACCTTGGGTCTCCTGGCATCCATTTTTGCAGTCATCCTTGCAATAAAAGAGTATATATGGACATATGCTGCTCTCGAGTTTGCTCTTGTGGCTATAACCGTGCACCTGTTCTATACTATGGTACATTTGAAGGCCATATATGCAATACTGCTTTCATCAGTTCTGGGTTTTGGTATGGCTATGAGCATCAACTATGCATATATCCAGTATGTTTCTTGGCGTCTTCAAGTTCCCCAGGATGCCAACCCAGTATGA 1278 0.4476 MQATQAATNETSDNSQKLQTDLQLNKEVSDNGPSGRRPDISLQIPPRHLGLGSTRGVRSLDHSQSFSKVIPSPRGFLRALSLKRKGKTGEAERSSLLYSDPKAAPDSPNTANFTSAVSWTRCTSLPVTPATNLSPSISTPASARTYSEQPKHHKAPAASGSKVSRSLSVPGRNMVIVRSLSFAAHSEHAQQDQNDDQITPVPVEDADEEIPEEEAVCRICYDVCDERNTLKLECSCKGDLTLVHEECAIKWFTTKGNKKCDVCCQEVQNLPVTLLRLPSSAQTGRRQVQGEQSMHPETISAWQDFVVLVLISTICYFFFLEQLLLPDMKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVAITVHLFYTMVHLKAIYAILLSSVLGFGMAMSINYAYIQYVSWRLQVPQDANPV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0339 425 CDD RING_CH-C4HC3_MARCH 217 263 - -
Prci4g0339 425 MobiDBLite consensus disorder prediction 129 146 - -
Prci4g0339 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 271 IPR013083 -
Prci4g0339 425 PANTHER OS02G0165000 PROTEIN 49 420 - -
Prci4g0339 425 SMART ringv_2 216 264 IPR011016 GO:0008270
Prci4g0339 425 ProSiteProfiles Zinc finger RING-CH-type profile. 209 270 IPR011016 GO:0008270
Prci4g0339 425 Pfam RING-variant domain 217 263 IPR011016 GO:0008270
Prci4g0339 425 SUPERFAMILY RING/U-box 213 267 - -
Prci4g0339 425 MobiDBLite consensus disorder prediction 129 165 - -
Prci4g0339 425 MobiDBLite consensus disorder prediction 84 109 - -
Prci4g0339 425 MobiDBLite consensus disorder prediction 1 30 - -
Prci4g0339 425 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0339 Prci-Chr4 2431871 2436641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0339 202 324 C3H Transcription Factor Family AT2G37950 28.788 3.54e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0339 - - gmx:100527094 610.142