Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0323 ATGGAGAAAGATCACGACAACTATCATTCGGCCGCACCTCCTTTTCCCCAGACCTTTAACTCTCTGCCGCTCGACTGCTCCAATAATCAGTCTCATGAGTATCCTCTCGGTCACCATCATCATCACAGTCTCATGAAGTTTCGGATTGGAGAAGCTTCCGGCGAAACCAGTCACATGAACAGCGGTGGGATGGTGGATTATATGCTCCACAACAGCAGCAACACTCCTCACCACCAACAACAACCACCATGTGGGTTTTATGGTGCACCCGCATGTTCTTCTTTTGATAAGCTGAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCCAAATTGGCCCTAAACCAGACCAAGAATTGTACTGAAGGAGAAGAAGATCAGTCCGGGATGGACCCGGTTTTCTTCCTTAAGTTCCCTGTGCTAAACGACAAGTCGCTAGAGGATCAGAATATGATGGGGACAAGTGCAGGAGGAGAAAACATAGCAGAAGAAGGAGTGAGAGATCAGGATGAAGCAGTAGAAGCTCGAGTTTCAGATAGTAATAACAACAAGTCGGGGCAGCAACATGGGTTTGTAAGAGAAGACATGATGGAGAAGAATAATAATAGTAACCCTACAAGCACAGTCCAGGAGAATAACAATAATCATAATAACAAGAGCAAGAAGAAGAGACCCAGAACCATCAAGACCAGCGAGGAGGTAGAGAGCCAGCGTATGACTCACATCGCCGTCGAAAGAAACCGTCGGAAGCAAATGAACGAGCATCTTCGCGTCCTCAGATCCCTCATGCCCGGTTCTTACGTCCAAAGGGGGGATCAAGCTTCGATAATAGGAGGAGCTATAGAGTTTGTGAGGGAATTAGAGCAGCTTCTTCAGTGCTTGGAGTCACAGAAGAGAAGAAGGCTTCTGGGAGAAGCTCATTCAAGGCAAGTTGGGGATTCTTCTTCTCTTGCAATACAGTCGCAGCAAGCTCCGTTTTTCCCAGCTTTGCCTTTACCGAATGATCAGATGAAGCTGGTAGAGTTTGAGAGTGGGCTCAGGGAAGAAACGGCGGAGAACAAGTCTTGTGTGGCTGATGTGGAAGTGAAGCTTATAGGGTTTGATGCGATGATCAAAATCCTGTCAAGAAGAAGACCAGGCCAGTTGATTAAGACTATTGCTGCTCTCGAAGATTTGCAGCTTATTATCCTCCACACCAACATCACCACTATTGAGCAAACTGTTCTCTATTCCTTCAATGTCAAGGTTGCAGGTGATTCAAGGTTCACAGCGGAAGATATAGCCAGCTCTGTCCAACAGATCTTCAGTTTCATTCATGAGAACACTGGAATGTAA 1338 0.4626 MEKDHDNYHSAAPPFPQTFNSLPLDCSNNQSHEYPLGHHHHHSLMKFRIGEASGETSHMNSGGMVDYMLHNSSNTPHHQQQPPCGFYGAPACSSFDKLSFADVMQFADFGPKLALNQTKNCTEGEEDQSGMDPVFFLKFPVLNDKSLEDQNMMGTSAGGENIAEEGVRDQDEAVEARVSDSNNNKSGQQHGFVREDMMEKNNNSNPTSTVQENNNNHNNKSKKKRPRTIKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAHSRQVGDSSSLAIQSQQAPFFPALPLPNDQMKLVEFESGLREETAENKSCVADVEVKLIGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVAGDSRFTAEDIASSVQQIFSFIHENTGM 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0323 445 Gene3D - 228 303 IPR036638 GO:0046983
Prci4g0323 445 PANTHER TRANSCRIPTION FACTOR FAMA 127 436 IPR044283 GO:0003700|GO:0010052
Prci4g0323 445 MobiDBLite consensus disorder prediction 164 178 - -
Prci4g0323 445 FunFam Basic helix-loop-helix transcription factor 228 303 - -
Prci4g0323 445 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 288 IPR011598 GO:0046983
Prci4g0323 445 MobiDBLite consensus disorder prediction 154 240 - -
Prci4g0323 445 Pfam Helix-loop-helix DNA-binding domain 238 289 IPR011598 GO:0046983
Prci4g0323 445 SMART finulus 243 294 IPR011598 GO:0046983
Prci4g0323 445 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 306 IPR036638 GO:0046983
Prci4g0323 445 MobiDBLite consensus disorder prediction 198 216 - -
Prci4g0323 445 CDD bHLH_AtFAMA_like 240 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0323 Prci-Chr4 2308700 2310920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0323 49 445 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 57.518 1.19e-141 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci4g0323 HLH 9.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0323 K26213 - gmx:100793349 515.768