Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0319 ATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTCTATATCTATGATTATTTGGTGAAGAAAAAATTGCATAATACTGCTGAGTCATTCATGACAGAAGGAAAGGTTGCGCCAGATCCAGTAGCAATTGATGCTCCTGGAGGGTTTCTTTTTGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCGAGGACAAACGAGAAACATTCTGAGTCTGCTGCAGCATATTTGGGGGCTCAACAGATTAAAGCAAAAGAACTGCAGCAGCTTCAACTTATGCGTCAAGCTCATTTTCAAAGGAGGGATCCTAATCATCCTCCTATTGGTGGTACTGTAAATGCTATTTCTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCTGCTAAAATGTATGAGGAACGGATGAAACACTCTAACCCAATGGATACGGAGACATCCCAACCACTTATAGATGCTAGAATGGCCCTTCTGAAGTCAACAACAAGTCATCCTGGTCAGATGGTTCAAGGAAATACTGGAAGTGTGACTGCAGCTTTGCACCACATGCAGGCTCGAAATCAGCAGACTCCTCAGGACATTAAAAGTGAAGTCAACATGGGTGGAATGCAAAGATCTTTGCCAATGGATCCTTCCTCAATCTACGGGCAGGGAGCAATGCAGTCAAAACCAGGAATAGTCAATCCAGGGGTCGGTGGTCTCACACTGAAAGGATGGCCTTTAACTGGCATAGAACAAATTCGACCAGGTTTAGGAGCACAAGTTCAAAAACCTCTCCTTCAAAGTGCAAATCAGTTCCAGCTTTTGCCCCAACAACAACAACAGCAACTCCTGGCTCAGGTTCAGGCACAAGGTAATATTACCAGTTCATCAATGTACGCAGATATGGATCCTCAACGATTGAGGGGATTAGCTAGGGGTAGTTTGAATGCAAAAGATGGCCAACCGATTGCAAATGATGGATCGATTGGTTCTCCAATGCAATCCACTTCATCTAAGATCAACATGCCACAGATGCAACAATCTACCACTCAGCAACAGCAGGATCCTTTGCATCCACAGCAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAACAGCACTGGTACTGGAAACACGATCGGCCCTTCTAATTCCCAGCCATCAACCCCATCTACTCATACTCCTTGTGATGGAGTAGCGATGACTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAGGTTTGATGATGTATGGTGTGGATGGCACAGTTGGTCTTGCATCGTCCACAAGTCAACTGTTGCAGGATGACATGGAACGTTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAGTCTTTTCTCTCACAAGATGATGGTGACGGAAGAGATTTGTTTGGCACCTTGAGACGGAACACTTCTGAGCACACAACAGATGCTTCAAAAGGCTTTTCCTTTAGTGAAGTTGGGTCTATACGCAAGAGCAATGGCAAAGTTGTTTGCTGTCATTTCTCATCCGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTACAAACAGAGAGCTCTACGGAGGAACACTCTTCTATTATTACTGATGTTCGCTTCAGACCAAATTCATCTCAGCTTGCAACTTCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTGCAGATCCAAACTTCTTTTTCCAGACATATACTGGTCACACCGCTCATGTGAAGTCCCTTGATTTCCACCCAAAGAAAAATGATCTTTTCTGTTCTTGTGATGAAAACAGTGAGATTCGCTTTTGGAATATTAATCAACATTCTTGCTCTCGTGTTTCCAAGGGAGGCTCTGCACAGGTAAGGTTTCAGCCAAGAACAGGACACCTTCTGGCTGCAGCGGCTGGTAATGTTGTGTCCCTCTATGATGTTGAGACTGACAGGCTGGTGCTGTCATTACAGGGGCACACTGCTGATGTGCATTCTGTTTGTTGGGATACCAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAGAGTGTGGTCATTGGCCTCTGGGGATTGCCTTCACGAGCTTAACTCCCGTGGGCACATGTCCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCTTTGGAGCTATGGAACGTGGCAGAGAATAGATCCATGACAATACCAGCTCATGAGTGTGTGATATCGGCTTTAGCACAATCACCAGTGTCAGGAATGGTTGCTTCCGCAAGTTATGACAAGTCCGTCAAGATTTGGAAATGA 2337 0.4514 MAQSNWEADKMLDVYIYDYLVKKKLHNTAESFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLGAQQIKAKELQQLQLMRQAHFQRRDPNHPPIGGTVNAISSEGMLGQPTASALAAKMYEERMKHSNPMDTETSQPLIDARMALLKSTTSHPGQMVQGNTGSVTAALHHMQARNQQTPQDIKSEVNMGGMQRSLPMDPSSIYGQGAMQSKPGIVNPGVGGLTLKGWPLTGIEQIRPGLGAQVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNITSSSMYADMDPQRLRGLARGSLNAKDGQPIANDGSIGSPMQSTSSKINMPQMQQSTTQQQQDPLHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMTGNLQNVGGVSKGLMMYGVDGTVGLASSTSQLLQDDMERFGDVGSLDDNVESFLSQDDGDGRDLFGTLRRNTSEHTTDASKGFSFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVFLWNMETLQTESSTEEHSSIITDVRFRPNSSQLATSSFDTTVRLWDAADPNFFFQTYTGHTAHVKSLDFHPKKNDLFCSCDENSEIRFWNINQHSCSRVSKGGSAQVRFQPRTGHLLAAAAGNVVSLYDVETDRLVLSLQGHTADVHSVCWDTNGDYLASVSQESVRVWSLASGDCLHELNSRGHMSHSCVFHPSYSTLLVIGGYQSLELWNVAENRSMTIPAHECVISALAQSPVSGMVASASYDKSVKIWK 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0319 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 571 IPR001680 GO:0005515
Prci4g0319 778 Gene3D - 473 629 IPR015943 GO:0005515
Prci4g0319 778 PRINTS G protein beta WD-40 repeat signature 765 778 IPR020472 -
Prci4g0319 778 PRINTS G protein beta WD-40 repeat signature 558 572 IPR020472 -
Prci4g0319 778 PRINTS G protein beta WD-40 repeat signature 516 530 IPR020472 -
Prci4g0319 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 746 778 - -
Prci4g0319 778 CDD WD40 493 778 - -
Prci4g0319 778 SUPERFAMILY WD40 repeat-like 491 778 IPR036322 GO:0005515
Prci4g0319 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 582 624 IPR001680 GO:0005515
Prci4g0319 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 582 617 - -
Prci4g0319 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 497 532 - -
Prci4g0319 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 538 IPR001680 GO:0005515
Prci4g0319 778 ProSitePatterns Trp-Asp (WD) repeats signature. 516 530 IPR019775 -
Prci4g0319 778 SMART Lish 8 40 IPR006594 GO:0005515
Prci4g0319 778 MobiDBLite consensus disorder prediction 325 406 - -
Prci4g0319 778 Gene3D - 630 778 IPR015943 GO:0005515
Prci4g0319 778 MobiDBLite consensus disorder prediction 313 406 - -
Prci4g0319 778 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Prci4g0319 778 Pfam LisH 10 36 IPR006594 GO:0005515
Prci4g0319 778 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 778 IPR044716 GO:0003714
Prci4g0319 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 539 571 - -
Prci4g0319 778 SMART WD40_4 532 571 IPR001680 GO:0005515
Prci4g0319 778 SMART WD40_4 698 737 IPR001680 GO:0005515
Prci4g0319 778 SMART WD40_4 739 778 IPR001680 GO:0005515
Prci4g0319 778 SMART WD40_4 490 529 IPR001680 GO:0005515
Prci4g0319 778 SMART WD40_4 575 615 IPR001680 GO:0005515
Prci4g0319 778 SMART WD40_4 657 695 IPR001680 GO:0005515
Prci4g0319 778 SMART WD40_4 618 654 IPR001680 GO:0005515
Prci4g0319 778 Pfam Coatomer WD associated region 597 716 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Prci4g0319 778 Pfam WD domain, G-beta repeat 539 571 IPR001680 GO:0005515
Prci4g0319 778 Pfam WD domain, G-beta repeat 744 778 IPR001680 GO:0005515
Prci4g0319 778 Pfam WD domain, G-beta repeat 502 529 IPR001680 GO:0005515
Prci4g0319 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 746 778 IPR001680 GO:0005515
Prci4g0319 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 704 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0319 Prci-Chr4 2273242 2283215 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0319 515 696 U-box Gene Family AT2G33340 28.571 1.44e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Prci4g0319 Coatomer_WDAD 1.6e-07 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0319 - - gmx:100797756 1298.88