Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0316 ATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTCTATATCTATGATTATTTGGTGAAGAAAAAATTGCATAATACTGCTGAGTCATTCATGACAGAAGGAAAGGTTGCGCCAGATCCAGTAGCAATTGATGCTCCTGGAGGGTTTCTTTTTGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCGAGGACAAACGAGAAACATTCTGAGTCTGCTGCAGCATATTTGGGGGCTCAACAGATTAAAGCAAAAGAACTGCAGCAGCTTCAACTTATGCGTCAAGCTCATTTTCAAAGGAGGGATCCTAATCATCCTCCTATTGGTGGTACTGTAAATGCTATTTCTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCTGCTAAAATGTATGAGGAACGGATGAAACACTCTAACCCAATGGATACGGAGACATCCCAACCACTTATAGATGCTAGAATGGCCCTTCTGAAGTCAACAACAAGTCATCCTGGTCAGATGGTTCAAGGAAATACTGGAAGTGTGACTGCAGCTTTGCACCACATGCAGGCTCGAAATCAGCAGACTCCTCAGGACATTAAAAGTGAAGTCAACATGGGTGGAATGCAAAGATCTTTGCCAATGGATCCTTCCTCAATCTACGGGCAGGGAGCAATGCAGTCAAAACCAGGAATAGTCAATCCAGGATTGAATCCAGGGGTCGGTGGTCTCACACTGAAAGGATGGCCTTTAACTGGCATAGAACAAATTCGACCAGGTTTAGGAGCACAAGTTCAAAAACCTCTCCTTCAAAGTGCAAATCAGTTCCAGCTTTTGCCCCAACAACAACAACAGCAACTCCTGGCTCAGGTTCAGGCACAAGGTAATATTACCAGTTCATCAATGTACGCAGATATGGATCCTCAACGATTGAGGGGATTAGCTAGGGGTAGTTTGAATGCAAAAGATGGCCAACCGATTGCAAATGATGGATCGATTGGTTCTCCAATGCAATCCACTTCATCTAAGATCAACATGCCACAGATGCAACAATCTACCACTCAGCAACAGCAGGATCCTTTGCATCCACAGCAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAACAGCACTGGTACTGGAAACACGATCGGCCCTTCTAATTCCCAGCCATCAACCCCATCTACTCATACTCCTTGTGATGGAGTAGCGATGACTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAGGTTTGATGATGTATGGTGTGGATGGCACAGTTGGTCTTGCATCGTCCACAAGTCAACTGGATGACATGGAACGTTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAGTCTTTTCTCTCACAAGATGATGGTGACGGAAGAGATTTGTTTGGCACCTTGAGACGGAACACTTCTGAGCACACAACAGATGCTTCAAAAGGCTTTTCCTTTAGTGAAGTTGGGTCTATACGCAAGAGCAATGGCAAAGTTGTTTGCTGTCATTTCTCATCCGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTACAAACAGAGAGCTCTACGGAGGAACACTCTTCTATTATTACTGATGTTCGCTTCAGACCAAATTCATCTCAGCTTGCAACTTCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTGCAGATCCAAACTTCTTTTTCCAGACATATACTGGTCACACCGCTCATGTGAAGTCCCTTGATTTCCACCCAAAGAAAAATGATCTTTTCTGTTCTTGTGATGAAAACAGTGAGATTCGCTTTTGGAATATTAATCAACATTCTTGCTCTCGTGTTTCCAAGGGAGGCTCTGCACAGGTAAGGTTTCAGCCAAGAACAGGACACCTTCTGGCTGCAGCGGCTGGTAATGTTGTGTCCCTCTATGATGTTGAGACTGACAGGCTGGTGCTGTCATTACAGGGGCACACTGCTGATGTGCATTCTGTTTGTTGGGATACCAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAGAGTGTGGTCATTGGCCTCTGGGGATTGCCTTCACGAGCTTAACTCCCGTGGGCACATGTCCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCTTTGGAGCTATGGAACGTGGCAGAGAATAGATCCATGACAATACCAGCTCATGAGTGTGTGATATCGGCTTTAGCACAATCACCAGTGTCAGGAATGGTTGCTTCCGCAAGTTATGACAAGTCCGTCAAGATTTGGAAATGA 2343 0.4511 MAQSNWEADKMLDVYIYDYLVKKKLHNTAESFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLGAQQIKAKELQQLQLMRQAHFQRRDPNHPPIGGTVNAISSEGMLGQPTASALAAKMYEERMKHSNPMDTETSQPLIDARMALLKSTTSHPGQMVQGNTGSVTAALHHMQARNQQTPQDIKSEVNMGGMQRSLPMDPSSIYGQGAMQSKPGIVNPGLNPGVGGLTLKGWPLTGIEQIRPGLGAQVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNITSSSMYADMDPQRLRGLARGSLNAKDGQPIANDGSIGSPMQSTSSKINMPQMQQSTTQQQQDPLHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMTGNLQNVGGVSKGLMMYGVDGTVGLASSTSQLDDMERFGDVGSLDDNVESFLSQDDGDGRDLFGTLRRNTSEHTTDASKGFSFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVFLWNMETLQTESSTEEHSSIITDVRFRPNSSQLATSSFDTTVRLWDAADPNFFFQTYTGHTAHVKSLDFHPKKNDLFCSCDENSEIRFWNINQHSCSRVSKGGSAQVRFQPRTGHLLAAAAGNVVSLYDVETDRLVLSLQGHTADVHSVCWDTNGDYLASVSQESVRVWSLASGDCLHELNSRGHMSHSCVFHPSYSTLLVIGGYQSLELWNVAENRSMTIPAHECVISALAQSPVSGMVASASYDKSVKIWK 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0316 780 Pfam Coatomer WD associated region 599 718 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Prci4g0316 780 Gene3D - 632 780 IPR015943 GO:0005515
Prci4g0316 780 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 780 IPR044716 GO:0003714
Prci4g0316 780 ProSitePatterns Trp-Asp (WD) repeats signature. 518 532 IPR019775 -
Prci4g0316 780 SUPERFAMILY WD40 repeat-like 493 780 IPR036322 GO:0005515
Prci4g0316 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 666 706 IPR001680 GO:0005515
Prci4g0316 780 SMART Lish 8 40 IPR006594 GO:0005515
Prci4g0316 780 MobiDBLite consensus disorder prediction 329 410 - -
Prci4g0316 780 MobiDBLite consensus disorder prediction 317 410 - -
Prci4g0316 780 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Prci4g0316 780 Pfam LisH 10 36 IPR006594 GO:0005515
Prci4g0316 780 Gene3D - 475 631 IPR015943 GO:0005515
Prci4g0316 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 584 619 - -
Prci4g0316 780 SMART WD40_4 741 780 IPR001680 GO:0005515
Prci4g0316 780 SMART WD40_4 659 697 IPR001680 GO:0005515
Prci4g0316 780 SMART WD40_4 577 617 IPR001680 GO:0005515
Prci4g0316 780 SMART WD40_4 492 531 IPR001680 GO:0005515
Prci4g0316 780 SMART WD40_4 620 656 IPR001680 GO:0005515
Prci4g0316 780 SMART WD40_4 700 739 IPR001680 GO:0005515
Prci4g0316 780 SMART WD40_4 534 573 IPR001680 GO:0005515
Prci4g0316 780 CDD WD40 495 780 - -
Prci4g0316 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 748 780 IPR001680 GO:0005515
Prci4g0316 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 573 - -
Prci4g0316 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 626 IPR001680 GO:0005515
Prci4g0316 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 573 IPR001680 GO:0005515
Prci4g0316 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 534 - -
Prci4g0316 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515
Prci4g0316 780 Pfam WD domain, G-beta repeat 746 780 IPR001680 GO:0005515
Prci4g0316 780 Pfam WD domain, G-beta repeat 504 531 IPR001680 GO:0005515
Prci4g0316 780 Pfam WD domain, G-beta repeat 541 573 IPR001680 GO:0005515
Prci4g0316 780 PRINTS G protein beta WD-40 repeat signature 518 532 IPR020472 -
Prci4g0316 780 PRINTS G protein beta WD-40 repeat signature 560 574 IPR020472 -
Prci4g0316 780 PRINTS G protein beta WD-40 repeat signature 767 780 IPR020472 -
Prci4g0316 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 748 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0316 Prci-Chr4 2273242 2283242 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0316 517 698 U-box Gene Family AT2G33340 28.571 1.50e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Prci4g0316 Coatomer_WDAD 1.6e-07 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0316 - - gmx:100797756 1301.96