Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0284 ATGAATGTAAGAAGTAATACGAATATGCAAAAGTTCAAAGGTGTAGTGCCTCAGCAAAATGGTCATTGGGGTGCTCAGATATACGCAAATCACCAAAGAATATGGCTTGGAACCTTCAAATCTGAACGAGAAGCTGCCATGGCTTATGACAGCGCCACCATCAAGCTCCGGAGCGGTGAAAGCCACCGGAACTTCCCTTGGAACGATCAAACCGTACAAGAGCCTCTTTTCCAAAGCCATTACACCACCAAAGCAGTCCTCAGCATGATCAGAGACGGCACCTATCCTTCCAAGTTAGCTTCTTTTCTCTTAAGCAGACAAACCCTAACCCTAACCTTAAACGGGGAAGAACAAATTACCAGGGCCAGAAAGAACGTAGAAGAAAAATTCTCCTACAACCAGCTCTTCCAGAAGGAACTTACACCGAGTGACGTGGGCAAACTCAATAGGCTCGTCATCCCCAAGAAACATGCGAGTAGGTATTTCCCTTACGCTTCGGGCACTACAGAAGAAGCCGACAGTAATAATAATTATGGGACGACGATGGATATTAACAGTGACATTGAGCTTGTGTTTTACGACAAGTTAATGAGGTCGTGGAAATTTAGATACTGCTATTGGAGAAGCAGTCAAAGCTTTGTGTTCACGAGAGGTTGGAACCGGTTTGTGAAAGACAAGAGGTTGAAGGCTAAGGATGTTATTGTGTTCTATAAGTGTGAGCCTATAATCGATAGGAGGATTATTAATGGGGGTGAAGTTTTTCATCTGATTGATGTTATCTATGATGAAGATAATGTTCATGAGAGCTCGAGGACGTCGCAGTGTTTTGGAGAGAAGAAGAGAGATTACAGGCAAAGTTTTGGGAAAATGTTGAGCTTCAATAATAGAACAGAGGAAGATGAAGAAGATGACGATGATGAGAATGAGACAGAGAATGGAAAGAAAATGTTGCATTCTCCAACAGATGCTGCAAAAAAGGGTTTGAAGCTTTTTGGTGTAAGAATTAACTGA 1011 0.4243 MNVRSNTNMQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEREAAMAYDSATIKLRSGESHRNFPWNDQTVQEPLFQSHYTTKAVLSMIRDGTYPSKLASFLLSRQTLTLTLNGEEQITRARKNVEEKFSYNQLFQKELTPSDVGKLNRLVIPKKHASRYFPYASGTTEEADSNNNYGTTMDINSDIELVFYDKLMRSWKFRYCYWRSSQSFVFTRGWNRFVKDKRLKAKDVIVFYKCEPIIDRRIINGGEVFHLIDVIYDEDNVHESSRTSQCFGEKKRDYRQSFGKMLSFNNRTEEDEEDDDDENETENGKKMLHSPTDAAKKGLKLFGVRIN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0284 336 CDD B3_DNA 135 237 IPR003340 GO:0003677
Prci4g0284 336 ProSiteProfiles AP2/ERF domain profile. 11 66 IPR001471 GO:0003700|GO:0006355
Prci4g0284 336 CDD AP2 10 68 IPR001471 GO:0003700|GO:0006355
Prci4g0284 336 Gene3D AP2/ERF domain 10 67 IPR036955 GO:0003700|GO:0006355
Prci4g0284 336 ProSiteProfiles B3 DNA-binding domain profile. 136 251 IPR003340 GO:0003677
Prci4g0284 336 MobiDBLite consensus disorder prediction 291 321 - -
Prci4g0284 336 Pfam AP2 domain 11 57 IPR001471 GO:0003700|GO:0006355
Prci4g0284 336 SMART B3_2 136 252 IPR003340 GO:0003677
Prci4g0284 336 Pfam B3 DNA binding domain 136 237 IPR003340 GO:0003677
Prci4g0284 336 Gene3D - 131 248 IPR015300 -
Prci4g0284 336 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 9 335 IPR044800 GO:0003700
Prci4g0284 336 SMART rav1_2 11 72 IPR001471 GO:0003700|GO:0006355
Prci4g0284 336 FunFam AP2 domain-containing protein RAP2.8 10 67 - -
Prci4g0284 336 SUPERFAMILY DNA-binding pseudobarrel domain 133 239 IPR015300 -
Prci4g0284 336 SUPERFAMILY DNA-binding domain 11 68 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0284 Prci-Chr4 2026362 2027408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0284 7 259 RAV Transcription Factor Family AT1G51120 58.238 2.26e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Prci4g0284 B3 4.3e-25 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0284 K09287 - qsa:O6P43_002489 358.221