Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0263 ATGGCATCAACATCGGGTGTCCCCAATATTCAATTCCCTGTGACAGAGTCAGCTTCGAACTATTGTCTGTATCCTGCTCCTCTTGCAAAATTTGATGATGTTGCGGCTGATCGCAGGCTCTTTTTGCATTCCTTGGAGAAGCTCCACAAATATATGAATTCCAAGTTCTTCATTCCCGTTATGGGGGGAAGAGAACTAGATTTGCATCGGCTTTTCTTGGAAGTGACTTCTCGTGGAGGCATTGAGAAAATTATAAGGGAGAGAAGATGGAAAGAAATAACTGCTGTTTTCAAATTTCCATCTACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATTCTTCATTGCTTTACCACTACGAACAAATGTACTATTTTAAGACCCCAGGATGGATTCCTACAACTGATGATTCGAGGAGTCCATCGAAAGTGCCAGTTCCTGCTCCGCGAAAGCAGCAGTTTTTGCATCCCCTAGTTAATGCCTCTGAATTGCCTGAAGCAACTTCAGCTTGTTCTGTGGGAACTCCAGTGATTGGGGTGATTGATGGAAAATTCGAAAGTGGGTATCTTGTTACTGTCACAGTGGGTTCAGAGAAACTTAAAGGTGTACTATATCAGGCTCCACAAAACCCTGCATTGCCAACAATGCTGCAACATGAGCAGCATGCAAAATTGAAACCACATCATCATGGGAAGGACCGAGAAATCAGTAAGATAATCGGTGAACTCTGGAACAAATTGATAGAGCCAGAGAAAGCAGTTTATCAGGAGCAGGCTCTTAAGGATAAAGAGAGGTACCAAGCTGAAATGGAGGGTTATAGGGAGAAAATGAAAACAGGACAGGGTGTGGGTGATGCTGTGCCGCTACAACAACAAATTCCGGGTAAGGATATGATGGATACGGACTTAAAAGTGGATGAAACTGAGGGAGTAGTATTTCCTCAAACAGCAGATGAGAGCAGTTCTGGTGAAAGTGAATACGAAGATGATAAAGGTGCAGAGCATGATTTGGGCATGGATGCGTCTGCTGGAATGATAGGAGTGGGTGCCGAATCTAGCTATCTGGGTGCAGAGAAGCTATCAAAGGGGGGAGAAATGGAGCTTCAGAATAAAGAAGGGAATGATGATGGAGATCGTGCTCAAAAGATGGGTGAGAGCTCAAGCATGATGGCTATGCAGTAA 1185 0.4388 MASTSGVPNIQFPVTESASNYCLYPAPLAKFDDVAADRRLFLHSLEKLHKYMNSKFFIPVMGGRELDLHRLFLEVTSRGGIEKIIRERRWKEITAVFKFPSTATNASFVLRKYYSSLLYHYEQMYYFKTPGWIPTTDDSRSPSKVPVPAPRKQQFLHPLVNASELPEATSACSVGTPVIGVIDGKFESGYLVTVTVGSEKLKGVLYQAPQNPALPTMLQHEQHAKLKPHHHGKDREISKIIGELWNKLIEPEKAVYQEQALKDKERYQAEMEGYREKMKTGQGVGDAVPLQQQIPGKDMMDTDLKVDETEGVVFPQTADESSSGESEYEDDKGAEHDLGMDASAGMIGVGAESSYLGAEKLSKGGEMELQNKEGNDDGDRAQKMGESSSMMAMQ 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0263 394 SUPERFAMILY HMG-box 220 280 IPR036910 -
Prci4g0263 394 Gene3D High mobility group box domain 207 284 IPR036910 -
Prci4g0263 394 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Prci4g0263 394 SMART hmgende2 211 276 IPR009071 -
Prci4g0263 394 Pfam HMG (high mobility group) box 221 275 IPR009071 -
Prci4g0263 394 MobiDBLite consensus disorder prediction 311 339 - -
Prci4g0263 394 MobiDBLite consensus disorder prediction 359 394 - -
Prci4g0263 394 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 209 275 IPR009071 -
Prci4g0263 394 SMART bright_3 36 127 IPR001606 GO:0003677
Prci4g0263 394 SUPERFAMILY ARID-like 33 137 IPR036431 GO:0003677
Prci4g0263 394 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Prci4g0263 394 Coils Coil 257 277 - -
Prci4g0263 394 Gene3D - 28 131 IPR036431 GO:0003677
Prci4g0263 394 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 219 323 - -
Prci4g0263 394 SMART ARID_2 32 122 - -
Prci4g0263 394 Pfam ARID/BRIGHT DNA binding domain 38 122 IPR001606 GO:0003677
Prci4g0263 394 MobiDBLite consensus disorder prediction 365 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0263 Prci-Chr4 1870327 1876083 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0263 1 306 ARID Transcription Factor Family AT1G04880 47.453 6.62e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci4g0263 ARID 7.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0263 - - pcin:129308526 764.992