Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0259 ATGGCATCAACATCGGGTGTCCCCAATATTCAATTCCCTGTGACAGAGTCAGCTTCGAACTATTGTCTGTATCCTGCTCCTCTTGCAAAATTTGATGATGTTGCGGCTGATCGCAGGCTCTTTTTGCATTCCTTGGAGAAGCTCCACAAATATATGAATTCCAAGTTCTTCATTCCCGTTATGGGGGGAAGAGAACTAGATTTGCATCGGCTTTTCTTGGAAGTGACTTCTCGTGGAGGCATTGAGAAAATTATAAGGGAGAGAAGATGGAAAGAAATAACTGCTGTTTTCAAATTTCCATCTACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATTCTTCATTGCTTTACCACTACGAACAAATGTACTATTTTAAGACCCCAGGATGGATTCCTACAACTGATGATTCGAGGAGTCCATCGAAAGTGCCAGTTCCTGCTCCGCGAAAGCAGCAGTTTTTGCATCCCCTAGTTAATGCCTCTGAATTGCCTGAAGCAACTTCAGCTTGTTCTGTGGGAACTCCAGTGATTGGGGTGATTGATGGAAAATTCGAAAGTGGGTATCTTGTTACTGTCACAGTGGGTTCAGAGAAACTTAAAGGTGTACTATATCAGGCTCCACAAAACCCTGCATTGCCAACAATGCTGCAACATGGTAGTGTTCCAGTTAGTTACCTTAATACCTCACCAGCTGCTTTGGGTGTCCATCGACACCGACGCAAGAAATCTGAGATAAAAAAAAGAGATCCTGCACATCCCAAACCTAATCGAAGTGGATACAATTTCTTCTTTGCAGAGCAGCATGCAAAATTGAAACCACATCATCATGGGAAGGACCGAGAAATCAGTAAGATAATCGGTGAACTCTGGAACAAATTGATAGAGCCAGAGAAAGCAGTTTATCAGGAGCAGGCTCTTAAGGATAAAGAGAGGTACCAAGCTGAAATGGAGGGTTATAGGGAGAAAATGAAAACAGGACAGGGTGTGGGTGATGCTGTGCCGCTACAACAACAAATTCCGGGTAAGGATATGATGGATACGGACTTAAAAGTGGATGAAACTGAGGGAGTAGTATTTCCTCAAACAGCAGATGAGAGCAGTTCTGGTGAAAGTGAATACGAAGATGATAAAGGTGCAGAGCATGATTTGGGCATGGATGCGTCTGCTGGAATGATAGGAGTGGGTGCCGAATCTAGCTATCTGGGTGCAGAGAAGCTATCAAAGGGGGGAGAAATGGAGCTTCAGAATAAAGAAGGGAATGATGATGGAGATCGTGCTCAAAAGATGGGTGAGAGCTCAAGCATGATGGCTATGCAGTAA 1326 0.4374 MASTSGVPNIQFPVTESASNYCLYPAPLAKFDDVAADRRLFLHSLEKLHKYMNSKFFIPVMGGRELDLHRLFLEVTSRGGIEKIIRERRWKEITAVFKFPSTATNASFVLRKYYSSLLYHYEQMYYFKTPGWIPTTDDSRSPSKVPVPAPRKQQFLHPLVNASELPEATSACSVGTPVIGVIDGKFESGYLVTVTVGSEKLKGVLYQAPQNPALPTMLQHGSVPVSYLNTSPAALGVHRHRRKKSEIKKRDPAHPKPNRSGYNFFFAEQHAKLKPHHHGKDREISKIIGELWNKLIEPEKAVYQEQALKDKERYQAEMEGYREKMKTGQGVGDAVPLQQQIPGKDMMDTDLKVDETEGVVFPQTADESSSGESEYEDDKGAEHDLGMDASAGMIGVGAESSYLGAEKLSKGGEMELQNKEGNDDGDRAQKMGESSSMMAMQ 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0259 441 MobiDBLite consensus disorder prediction 358 386 - -
Prci4g0259 441 Pfam ARID/BRIGHT DNA binding domain 38 122 IPR001606 GO:0003677
Prci4g0259 441 Gene3D - 28 131 IPR036431 GO:0003677
Prci4g0259 441 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Prci4g0259 441 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 255 322 IPR009071 -
Prci4g0259 441 SUPERFAMILY HMG-box 242 326 IPR036910 -
Prci4g0259 441 SMART hmgende2 254 323 IPR009071 -
Prci4g0259 441 MobiDBLite consensus disorder prediction 236 259 - -
Prci4g0259 441 SUPERFAMILY ARID-like 33 137 IPR036431 GO:0003677
Prci4g0259 441 MobiDBLite consensus disorder prediction 406 441 - -
Prci4g0259 441 FunFam High mobility group B protein 15 237 332 - -
Prci4g0259 441 Gene3D High mobility group box domain 239 332 IPR036910 -
Prci4g0259 441 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 370 - -
Prci4g0259 441 CDD HMG-box_AtHMGB9-like 255 321 - -
Prci4g0259 441 MobiDBLite consensus disorder prediction 412 430 - -
Prci4g0259 441 Coils Coil 304 324 - -
Prci4g0259 441 SMART bright_3 36 127 IPR001606 GO:0003677
Prci4g0259 441 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Prci4g0259 441 Pfam HMG (high mobility group) box 255 322 IPR009071 -
Prci4g0259 441 SMART ARID_2 32 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0259 Prci-Chr4 1870327 1876660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0259 1 353 ARID Transcription Factor Family AT1G04880 55.882 8.35e-121 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci4g0259 ARID 8.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0259 - - pcin:129308526 884.789