Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0226 ATGGCGTTTGTTCCCCAACCCCAAGAAGCCGAAGAAGACACCAACGTCGACATTCACACCACCCACGGCACTCCCATTCGTTATCTTCCTCTCGATCATCTTTATTCTGCTACATCCCCCTGCCGTGTCAGCGCCAGTGGTTCTTCAAACGTCATGTCGAAGAAGGTCAAGGCCCGCAAGCTCAATCTCACCCATTTGGATTTCGACCCTGATCACAAGAACTCACTTCATAAGCCTCCTCTTCTTCATGTATACTCTCGCCGTCATAAGAAGCCCCGACATTCCTCGGAGAGCGTGTCCTTTTTTGAATCTTTGATGAGCCGGGGTGGACCCACCTCGGATATTCGCAAAATTGATGGTTCTGGGGAGCACCGTGAGAAGGGCAATTCTGAGGCTGGGACACTGAAGGAGAAGAGAAAAGCTGGGAGCGCTGAATTGGTGAATTTGGGTGTGGATTTGAGCGCATTGGGTGCTCTTGACGGGCCTCGGTTGAGGGACTGTCGTGTTCATAATGTTAATAATATCAGTGATTGTGACTCTAGTATGAGGAAAAATCGGGTCCGCTTGGAAAATTTTCCGAAGTTATTGCCTGCTTCCCGCACTGTAAAGAGATGGGTCAGGTTGACTTTTGATAATGCTGATCCCGAGACATTGGTTGGACTAAGATGCAAGGTTTATTGGCCCATGGATTTGAAATGGTACATTGGTCGAGTCATAGGTTATGATTCAGAAACTAAGATACATCATGTTAAATATGAAGACAGTGATGAAGAAAACTTAATTCTTTCAAATGAGAAAGTAAGGTTTCATGTTTCCCGTGAGGAACTGAAGCAACTAAACTTGAGTAGTTGTAACATTACTGATTATGATGCGGAAGAGCTGCTTGCCTTGGCTGCAAGTTTAGACAACTGTCAAGAGTTTGAGCCGGGTGAAGTTGTATGGGCTAAGCTAACAGGTCATGCAATGTGGCCAGCTCTTGTTATGGATGAATCACTTGCTGGGAATTGTAAAGGTTTAAAATTATTTTCCGGTGGAAGATCCGTTCCTGTACAATTTTTTGGCACACATGACTTTGCAAGGGTTAGACCACAGCAGGTGAAATCATTTCTCACTGGACTTCTTTCTCGTCTCCACTTGAAATGCAAGAAGCCTCATTTTTTTGAAGGATTAGAAGAGGCAAAAATCTATTTAAGCAAACAGAAGCTTCCTTCTGAAATGCTGCGGTCACAGAAAAGATGCAAGGCTGATAACTGCAAAAATGTACATGAAGAGGATGAAGGATGTACATATTCTGGTGAAGATTGTTTAGATGATGGATGGGCCCAGACAGCATTGAAAAACATTGAAACTTCTCCTTACGTAGTAGGAGATTTGAAAATTTTAAGCCTAGGAAGAATTGTTCATGATTCTGCAAATTTTCAAGACGGAAGTGTAATCTGGCCAGAGGGTTATATGGCAGTGAGGAATTTTACTTCAGTTACTGATCCAAAAGTTTGCACATCATATAAGATGGAGGTGTTGAGAGATCCTGAGTCAAAGGTTCGACCACTTTTTAGGGTGACACTGGATGGTGGAGAGCAGTTTAATGGTCCCACAGCAACTGCTTGCTGGAATAAAATATACAAACGGATAAAAAAAATAGAGAAGGGTGTTTCTGACGTTTCCACTGCAGATGGAAGGCTTGTAAGGGACTATAAATCAGGAACTGATATGTTTGGTTTTTCCAATCCCAAAGTAGCTAAACTTATACAGGGATTATATAAATGCAGCTCCTCTTCAAGAAACTTAATGTGCAAGATAGGTTCTGGAAGATATAGTGATCTGCCTGTTGGTTATAGGCAGGTGCATATTGATTGGTTTGATCTCGATAAGTGCAACGTGTGTCACATGGATGAGGAATATGAGAACAATCTGTTTCTGCAATGTGACAAATGCAGAATGATGGTCCATGCCAGATGTTATGGAGAACTAGAACCTTCTAATGGAGTGTTATGGTTGTGTAACCTATGTCGCTTGGGTGCTCCCTCCCCCCCACCTCCTTGCTGCCTATGTCCACTGATAGGAGGTGCAATGAAGCCTACAACGGATGGTCGATGGGCTCATTTGGCATGTGCCATGTGGATACCAGAAACTTGCTTAGCTGATGTCAAGCGGATGGAGCCTATTGATGGGATAAGTAGAATCAGGCTTTTGTGTGCACTTCAGGACCGCTGGAAATTGTTATGTAGCATTTGTGGGGTGCCTTATGGTGCTTGCATCCAGTGTTCAAATAATTCTTGTCGAGTGGCATATCATCCACTTTGTGCACGGGCTGCTGGTCTCTGTGTTGAGCTTGAGAATGAGGACAGGCTCTATCTACTCTCTGTTGATGATGATGAAGATCAGTGCATTCGCTTGCTCTCCTTCTGCAAGAAACATAGGCATCCATCAAATGATCATTCTATTGCTGATGAACGCATTGGGCGCGTTGCCAGTCAATGTTCAGAATATAAACCACCACCCAACCCGTCTGGTTGTGCTCGCAGTGAACCATACAATAACTTTGGCAGGAGAGGGCGAAAAGAACCTGAAGCACTTGCAGCAGCATCCTTAAAACGCTTGTTTGTAGAAAATCAATCTTGTTTGGTTGGTGGACATTGCCAGCATGGAGTGTCAGACAACGTAGAGCCATCTGGAAGAGGAGTTTGCTCTAAATTCTTTTGTAGCCAGCACAGGCTGAAGACCTCTCTGGTTGATGCTTCAAATGGCATACTTTCTATTGCTGAGAAATATAAATACATGAGGGAAACCTTTAGGAAAAGGCTAGCATTTGGGAAATCAAGAATTCATGGATTTGGTATCTTTGCAAAGCATCCATATAAAGGCGGGGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCTTCCATAGCTGATCGGAGAGAGCACTTTATATATAATTCTTTGGTGGGTGCTGGAACATACATGTTTCGGATTGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTGATTAATCATTCTTGTGCACCAAATTGCTACTCAAGAGTGATCAGTGTTAATGGTGATGAGCACATTATAATATTTGCGAAGAGGGATATTAAACAATGGGAGGAGCTCACATATGATTATAGGTTTTTTTCAATTGATGAACGATTAGCTTGTTATTGTGGCTTCCCAAGATGTCGAGGTGTTGTAAATGATACTGAGGCAGAAGAGCGAGCTGCAAAGCTATATGTGCCTCGGAGTGAATTAATAGATTGGAGGGGAGAATAA 3294 0.4314 MAFVPQPQEAEEDTNVDIHTTHGTPIRYLPLDHLYSATSPCRVSASGSSNVMSKKVKARKLNLTHLDFDPDHKNSLHKPPLLHVYSRRHKKPRHSSESVSFFESLMSRGGPTSDIRKIDGSGEHREKGNSEAGTLKEKRKAGSAELVNLGVDLSALGALDGPRLRDCRVHNVNNISDCDSSMRKNRVRLENFPKLLPASRTVKRWVRLTFDNADPETLVGLRCKVYWPMDLKWYIGRVIGYDSETKIHHVKYEDSDEENLILSNEKVRFHVSREELKQLNLSSCNITDYDAEELLALAASLDNCQEFEPGEVVWAKLTGHAMWPALVMDESLAGNCKGLKLFSGGRSVPVQFFGTHDFARVRPQQVKSFLTGLLSRLHLKCKKPHFFEGLEEAKIYLSKQKLPSEMLRSQKRCKADNCKNVHEEDEGCTYSGEDCLDDGWAQTALKNIETSPYVVGDLKILSLGRIVHDSANFQDGSVIWPEGYMAVRNFTSVTDPKVCTSYKMEVLRDPESKVRPLFRVTLDGGEQFNGPTATACWNKIYKRIKKIEKGVSDVSTADGRLVRDYKSGTDMFGFSNPKVAKLIQGLYKCSSSSRNLMCKIGSGRYSDLPVGYRQVHIDWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPSNGVLWLCNLCRLGAPSPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGISRIRLLCALQDRWKLLCSICGVPYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRHPSNDHSIADERIGRVASQCSEYKPPPNPSGCARSEPYNNFGRRGRKEPEALAAASLKRLFVENQSCLVGGHCQHGVSDNVEPSGRGVCSKFFCSQHRLKTSLVDASNGILSIAEKYKYMRETFRKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPRCRGVVNDTEAEERAAKLYVPRSELIDWRGE 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0226 1097 CDD Tudor_Agenet_AtEML-like 219 269 - -
Prci4g0226 1097 SMART PHD_3 741 807 IPR001965 -
Prci4g0226 1097 SMART PHD_3 624 671 IPR001965 -
Prci4g0226 1097 Pfam F/Y rich C-terminus 515 589 IPR003889 GO:0005634
Prci4g0226 1097 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 675 809 IPR013083 -
Prci4g0226 1097 FunFam Histone-lysine N-methyltransferase 676 809 - -
Prci4g0226 1097 SMART fyrn_3 465 509 IPR003888 GO:0005634
Prci4g0226 1097 Gene3D - 451 591 - -
Prci4g0226 1097 CDD ePHD_ATX1_2_like 687 806 IPR041956 -
Prci4g0226 1097 ProSiteProfiles Extended PHD (ePHD) domain profile. 678 807 IPR034732 -
Prci4g0226 1097 Pfam PWWP domain 310 396 IPR000313 -
Prci4g0226 1097 SMART set_7 933 1057 IPR001214 GO:0005515
Prci4g0226 1097 ProSitePatterns Zinc finger PHD-type signature. 625 670 IPR019786 -
Prci4g0226 1097 Pfam PHD-finger 637 671 - -
Prci4g0226 1097 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 616 674 IPR013083 -
Prci4g0226 1097 SMART fyrc_3 517 597 IPR003889 GO:0005634
Prci4g0226 1097 CDD PHD_ATX1_2_like 624 670 IPR042010 -
Prci4g0226 1097 ProSiteProfiles PWWP domain profile. 309 372 IPR000313 -
Prci4g0226 1097 SUPERFAMILY SET domain 926 1073 IPR046341 -
Prci4g0226 1097 SMART PWWP_4 307 370 IPR000313 -
Prci4g0226 1097 Gene3D SET domain 869 1079 IPR046341 -
Prci4g0226 1097 ProSiteProfiles FYR domain FYRC motif profile. 513 599 IPR003889 GO:0005634
Prci4g0226 1097 Pfam SET domain 944 1050 IPR001214 GO:0005515
Prci4g0226 1097 FunFam Histone-lysine N-methyltransferase 866 1090 - -
Prci4g0226 1097 SUPERFAMILY Tudor/PWWP/MBT 303 405 - -
Prci4g0226 1097 CDD PWWP_AtATX1-like 308 403 - -
Prci4g0226 1097 SUPERFAMILY FYVE/PHD zinc finger 615 689 IPR011011 -
Prci4g0226 1097 CDD SET_SETD1-like 921 1069 - -
Prci4g0226 1097 PANTHER PHD FINGER PROTEINS 42 1087 - -
Prci4g0226 1097 ProSiteProfiles Post-SET domain profile. 1057 1073 IPR003616 -
Prci4g0226 1097 ProSiteProfiles SET domain profile. 933 1051 IPR001214 GO:0005515
Prci4g0226 1097 Pfam PHD-zinc-finger like domain 680 806 - -
Prci4g0226 1097 ProSiteProfiles FYR domain FYRN motif profile. 450 509 IPR003888 GO:0005634
Prci4g0226 1097 Pfam F/Y-rich N-terminus 456 506 IPR003888 GO:0005634
Prci4g0226 1097 MobiDBLite consensus disorder prediction 117 139 - -
Prci4g0226 1097 Gene3D - 216 268 - -
Prci4g0226 1097 MobiDBLite consensus disorder prediction 112 139 - -
Prci4g0226 1097 ProSiteProfiles Zinc finger PHD-type profile. 622 673 IPR019787 -
Prci4g0226 1097 Gene3D - 298 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0226 Prci-Chr4 1558512 1574883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0226 600 777 C2H2 Transcription Factor Family AT3G14740 37.363 5.05e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci4g0226 zf-HC5HC2H_2 7.1e-30 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0226 - - gmx:100808923 1653.65