Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0166 ATGGACGGAGCGCCACATTCGTCCGCCGGCTCCGGCGCTGGAGGCGGCGGAACTGGAGGTCCAGCTCCCTTCCTTATCAAGACCTATGAAATGGTCGACGATTCTTCAACAGACGATATTGTATCGTGGAGCTCCACCAACAACAGCTTTGTCGTCTGGAACCCCCCCGAGTTTGCTCGTCAACTTCTTCCTACCTATTTCAAGCACAACAATTTTTCCAGCTTCATCCGCCAGCTCAATACCTACGGGTTTCGAAAAGTACATCCTGAGCGATGGGAGTTCGCTAATGATGATTTTGTAAAAGATCAAAAGCATCTTCTCAAGAATATTCACCGTAGGAAACCTATCCACAGTCACAGCCATCCTCCAGGCTCTGTTGTGGATCCTGAACGGGCAGCATTTGAGGAAGAAATAGATAAACTTACACGTGAGAAAACAGCTTTTGAATCCAACATCGTCAGATTTAAAAAACAGTCAGCTGTAAAGCTTCAGCTGGACGATCTATTGCAGCGATTAGAAGGCATGGAGAAGAGACAGAAGGATTTGCTGAACTTCTTTGAAAAGGCTCTTCAGAATCCTTCTTTTGTTGAACATCTTTCTCAGAAACTTGATAGCATGGATTTATCAGCATATAATAAGAAAAGAAGATTACCTCAGGTCGATCACTTGCAGCCAGTTGGTGAAAGTAACTTCGTTGAAAATCATAGCAATTTTAGAACAGAATTTGGCACCGTCATCCACCAAGACTTCTCAAATAAACTCAGATTGGAGTTATCACCAGCCGTTTCAGATATGAATTTGGTATCACGCAGCACTCAGAGTTCAAATGAAGATGGGGAAAATCCACAGAAGAGGCTATCTGAAGGAACGCCCAAAGGAGTGCAGCCAAGAACAGCTCTTGCATTTACGCCTGAAACATTAGAGCTTGCAGATACTGGAGCATCTTTTTCTTTCAAGATGGATTCATGTCTATCACAAAGAGCAACAACTGCTGAGAGCACAAAACTGCACTCTTTGCATCTAAGTAACGAAGAAGGAGACAGTCATATATCCTGCCATCTAAATTTGACTCTGGCGTCTTCTTCTTTGCAAGTTAACAGAAATTCATACTCAGCTAGATCACCCCAAATAGACTGTCAGGAAATAGGCAAATTGGCAGAATCTAGATTTTACGAAAACGATAAAGATTCTAATAGTGGAGTTCCTTCGACCAGAAATTCAGCTCATGAGGTTACCAATTTAACCTTCTCTCAGCCAAAGGAGACTCCAAGCAGCAACCAAATGCCACCGGCTGCTCCAGCCAGAGTGAATGATGTCTTCTGGGAACAGTTCCTTACTGAAAGACCAGGTTGTTCAGACAATGAAGAGGCAATATCCAACTACAGAGCAAATCCATATGAAGAGCAAGACGAAGGCCGGTCAATTCCTGGAATCTCCAGAAATGTTAAGAATATGGATCGGCTGACACTTTGA 1473 0.4352 MDGAPHSSAGSGAGGGGTGGPAPFLIKTYEMVDDSSTDDIVSWSSTNNSFVVWNPPEFARQLLPTYFKHNNFSSFIRQLNTYGFRKVHPERWEFANDDFVKDQKHLLKNIHRRKPIHSHSHPPGSVVDPERAAFEEEIDKLTREKTAFESNIVRFKKQSAVKLQLDDLLQRLEGMEKRQKDLLNFFEKALQNPSFVEHLSQKLDSMDLSAYNKKRRLPQVDHLQPVGESNFVENHSNFRTEFGTVIHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGENPQKRLSEGTPKGVQPRTALAFTPETLELADTGASFSFKMDSCLSQRATTAESTKLHSLHLSNEEGDSHISCHLNLTLASSSLQVNRNSYSARSPQIDCQEIGKLAESRFYENDKDSNSGVPSTRNSAHEVTNLTFSQPKETPSSNQMPPAAPARVNDVFWEQFLTERPGCSDNEEAISNYRANPYEEQDEGRSIPGISRNVKNMDRLTL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0166 490 Gene3D - 19 114 IPR036388 -
Prci4g0166 490 MobiDBLite consensus disorder prediction 462 490 - -
Prci4g0166 490 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci4g0166 490 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci4g0166 490 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci4g0166 490 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci4g0166 490 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci4g0166 490 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci4g0166 490 MobiDBLite consensus disorder prediction 390 410 - -
Prci4g0166 490 MobiDBLite consensus disorder prediction 395 410 - -
Prci4g0166 490 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 277 IPR027725 -
Prci4g0166 490 Coils Coil 131 178 - -
Prci4g0166 490 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Prci4g0166 490 MobiDBLite consensus disorder prediction 268 297 - -
Prci4g0166 490 FunFam Heat shock transcription factor 1 17 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0166 Prci-Chr4 1092723 1097269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0166 1 490 HSF AT4G13980 54.234 4.50e-167 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci4g0166 HSF_DNA-bind 5.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0166 K09419 - gmx:100816484 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g0166 4 1092723 1097269 Prci4g0166 4 1092723 1097269 ECH