Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0158 ATGGCATTGTGTAATAAACTTGGGAGTCTATTAAGGCAGAGTGCCGCACGGAGCGGACATGTACCGGTTGGGTCGATGCTGAATTATGTTCGCTGCATGTCATCCTCTAAGCTTTTCATTGGCGGCCTTTCTTATGGAGTTGATGATCAGTCTCTCAGGGATGCATTTACCAGCTTTGGAGATGTGGTAGAGGCAAGGGTTATAACTGATAGAGACACTGGAAGGTCAAGAGGGTTTGGATTCGTTAACTTCTCCAGTGACGAATCTGCAAGTTCAGCTCTTTCTGCAATGGATGGGCAGGAGCTAAATGGAAGAAACATTCGGGTGAGCTATGCAAATGACAGACCACCTAGACCTCGATCCTTTGGTGGCGGCGGCGGATATGGTGGCGGTGGTTATGGTAGGGATGATGGAGGTTTTGGCAATCCATCCTTCTAA 438 0.4817 MALCNKLGSLLRQSAARSGHVPVGSMLNYVRCMSSSKLFIGGLSYGVDDQSLRDAFTSFGDVVEARVITDRDTGRSRGFGFVNFSSDESASSALSAMDGQELNGRNIRVSYANDRPPRPRSFGGGGGYGGGGYGRDDGGFGNPSF 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0158 145 SMART rrm1_1 37 110 IPR000504 GO:0003723
Prci4g0158 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Prci4g0158 145 SUPERFAMILY RNA-binding domain, RBD 31 142 IPR035979 GO:0003676
Prci4g0158 145 FunFam Glycine-rich RNA-binding protein 2 25 144 - -
Prci4g0158 145 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 33 132 - -
Prci4g0158 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Prci4g0158 145 CDD RRM2_NsCP33_like 37 112 - -
Prci4g0158 145 Gene3D - 31 143 IPR012677 -
Prci4g0158 145 MobiDBLite consensus disorder prediction 110 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0158 Prci-Chr4 1043233 1045378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0158 36 118 Eukaryotic Initiation Factors Gene Family AT1G49760 31.325 1.65e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0158 - - qsa:O6P43_002606 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g0158 4 1043233 1045378 Prci4g0158 4 1043233 1045378 ECH