Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0083 ATGCGAACTTCATGGGCAGATTTGGCTGCGAGCTCTGCAGCTGAAAGTGCAGGTCCTGGCTCTTCTGCCAGCAATGTCGGAACTGGTAACACTTCAGCTCCTTCACGTCCAGTCTATGTCCCTCCACATCTTCGGAACCGCCCACCCTCTGCAGAAGCCCCTGTTCCAGCACATAGTGGCCGCACGCCTGGTTCTGGTTCTGGTACGGGTACTGGTAATGTTGGATCACGCTTCGCTATGCCCAGAAATGAGAATCGGTTTGGGTATGGTGGCAGCAGCCGTGCTGGATGGGGAAACAGGGTCAGTGGTTGGGATCGTGGCAGGGAGAGGGAGGCCAATCCCTTTGGTGATGAGGATAATGCGGAGGAGGCATTTGATGAGCAGGAGAATACAGGAATCAATTTTGATGCATATGAAGACATTCCTGTGGAGACCAGTGGTGCGAATGTGCCACCACCAGTGAATACATTTGCAGAGATTGACTTGGGTGAAGCACTTAATCAGAATATAAGAAGGTGCAAATATGTGAAGCCAACGCCTGTTCAAAGATATGCCATACCAATATCCCTTGCTGGACGAGATTTGATGGCTTGTGCCCAGACCGGTTCTGGAAAGACTGCTGCTTTCTGTTTTCCTATCATCAGTGGAATTATGAGGGGCCAACCTGTGCAGAGGCCTCCTCGTGGGGTGCGTACAGTGTATCCACTTGCTCTTGTTCTCTCGCCTACTAGGGAGCTATCAATGCAAATACATGAAGAAGCCAGGAAGTTTTCTTACCAAACTGGGGTTAGGGTGGTTGTTGCTTATGGCGGTGCACCAATAAACCAGCAGCTGCGAGATCTTGAGAGAGGAGTTGACATTCTTGTGGCAACTCCTGGAAGATTGGTGGATTTGCTGGAGAGGGCTAGAGTTTCACTGCAGATGATAAGATATTTAGCCTTAGATGAAGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGGAAGATTGTGGAGCAGATGGACATGCCTCCACCTGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGATTGGCCTCAGATTTCCTTTCAAATTATGTTTTTCTGGCCGTTGGAAGAGTGGGTTCAAGTACAGATTTGATTGTCCAAAGAGTTGAATTTGTTCAAGAATCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCTCAGAGGGCAAATGGTGTGCAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCTTTGGAACATTGGCTGTGCATTAATGGTTTTCCAGCTACCACTATTCACGGAGATAGGACACAACAGGAGAGAGAAATGGCATTAAGGTCATTTAAAAGTGGCAACACCCCTATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTGAACTTCGATCTACCAAATGATATTGATGATTATGTACACCGAATTGGAAGGACGGGAAGAGCGGGAAAGAAAGGTCTTGCCACTGCATTCTTCAATGAAAACAACGCATCCCTTGCAAGGGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTGCCTGCTTGGCTCTCACGGTATGCTGCTCGATCATCTTTTGGTGGAAGGAGCCGTCGATCAGGTGGAGGTCGTTTTGGTGGCCGTGACTTCCGAAGAGAGAGCTTCAACAGCAGAGGTGGTTCCGATTATTACAGTGCAGGAAATAGCAGTGGCGGGTATGGGGCTTCTGGTGGGTATGCTGGAGGATATGGTCCTGGTGTCACGAGTGCGTGGGATTGA 1842 0.4837 MRTSWADLAASSAAESAGPGSSASNVGTGNTSAPSRPVYVPPHLRNRPPSAEAPVPAHSGRTPGSGSGTGTGNVGSRFAMPRNENRFGYGGSSRAGWGNRVSGWDRGREREANPFGDEDNAEEAFDEQENTGINFDAYEDIPVETSGANVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCINGFPATTIHGDRTQQEREMALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNASLARALADLMQEANQEVPAWLSRYAARSSFGGRSRRSGGGRFGGRDFRRESFNSRGGSDYYSAGNSSGGYGASGGYAGGYGPGVTSAWD 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0083 613 Pfam Helicase conserved C-terminal domain 395 510 IPR001650 -
Prci4g0083 613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 382 549 IPR001650 -
Prci4g0083 613 MobiDBLite consensus disorder prediction 1 125 - -
Prci4g0083 613 MobiDBLite consensus disorder prediction 62 78 - -
Prci4g0083 613 CDD SF2_C_DEAD 383 519 - -
Prci4g0083 613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 371 IPR014001 -
Prci4g0083 613 FunFam ATP-dependent RNA helicase RhlB 374 553 - -
Prci4g0083 613 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Prci4g0083 613 Pfam DEAD/DEAH box helicase 179 360 IPR011545 GO:0003676|GO:0005524
Prci4g0083 613 SMART ultradead3 174 386 IPR014001 -
Prci4g0083 613 Gene3D - 374 553 IPR027417 -
Prci4g0083 613 MobiDBLite consensus disorder prediction 554 573 - -
Prci4g0083 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 528 IPR027417 -
Prci4g0083 613 Gene3D - 112 373 IPR027417 -
Prci4g0083 613 MobiDBLite consensus disorder prediction 103 117 - -
Prci4g0083 613 FunFam Probable ATP-dependent RNA helicase DDX4 117 373 - -
Prci4g0083 613 CDD DEADc_DDX3_DDX4 156 377 IPR044763 GO:0003724|GO:0005524
Prci4g0083 613 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 125 549 - -
Prci4g0083 613 SMART helicmild6 429 510 IPR001650 -
Prci4g0083 613 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0083 Prci-Chr4 653197 659502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0083 153 542 Eukaryotic Initiation Factors Gene Family AT3G19760 32.481 1.57e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0083 K11594 - gmx:100795756 1013.45