Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0045 ATGAGAAAGCCGTCGCAGGCGTCGTCCAGGGCAGCTGCCAAGACCACCCCCTGCTGCGCCAAAGTAGGGCTCAAGAGAGGGCCCTGGACTCCCGAAGAAGACGAGCTCCTCTCCAAGTGCATCCAGAAAGAGGGAGAAGGCAGATGGCGCACCCTCCCCAAGCGAGCCGGTCTCCTCCGCTGCGGCAAAAGCTGCCGCCTCCGCTGGATGAACTATCTCCGCCCCTCCGTCAAGCGCGGCCACATCGCCCCCGACGAGGAGGACCTCATCCTCCGCCTCCACCGCCTCCTCGGCAATCGGTGGTCTCTGATCGCGGGCAGGATCCCCGGGAGGACCGACAACGAGATTAAGAACTACTGGAACACCCATCTCAGCAAGAAGCTCATCAGCCAAGGCATCGATCCCCGCACCCACAAGCCCCTCAGCCCTAATAATACCCACCCTTCAACCACCACTGCTGCTGCTCCGTGTTCGCTCCATCATCACAATTCATCGCCCAGCCTCCCTGCTTCCGCTAAACCTAATCCCAGTAAACCTCCAGTTGCCGAGCAGGACCCCCGTCCCTTCTGTCACGCCACTCCTCCCCCTCTCTCGGATCCATATGATCACCCCTTGGCCCCCGGGGATCTACCCCCACCGCTCCCCTTGTCCAATACCCCCACCAATCCCGATGACCCCGTGGACGACGACGACGACGACGACGACGTTGTCGAGGACGATATCAACTACTGTACCGACGACGTTTTCTCCTCTTTCATCAACTCCCTCATCAACGACGATGCCTTTTCTGCTCAACAGCACCCTCCGCCCCCTCCATATAATTCCACTGGCGGTGTCGCCTACAACGATCCCGCCAACAACATGCCCGATGCAGATCGTGTCCGCTAG 888 0.6047 MRKPSQASSRAAAKTTPCCAKVGLKRGPWTPEEDELLSKCIQKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLSPNNTHPSTTTAAAPCSLHHHNSSPSLPASAKPNPSKPPVAEQDPRPFCHATPPPLSDPYDHPLAPGDLPPPLPLSNTPTNPDDPVDDDDDDDDVVEDDINYCTDDVFSSFINSLINDDAFSAQQHPPPPPYNSTGGVAYNDPANNMPDADRVR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0045 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Prci4g0045 295 FunFam transcription repressor MYB5-like 83 151 - -
Prci4g0045 295 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Prci4g0045 295 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 16 153 - -
Prci4g0045 295 FunFam Myb transcription factor 23 79 - -
Prci4g0045 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Prci4g0045 295 CDD SANT 28 73 IPR001005 -
Prci4g0045 295 MobiDBLite consensus disorder prediction 260 295 - -
Prci4g0045 295 MobiDBLite consensus disorder prediction 133 238 - -
Prci4g0045 295 Gene3D - 83 152 - -
Prci4g0045 295 Gene3D - 23 79 - -
Prci4g0045 295 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Prci4g0045 295 MobiDBLite consensus disorder prediction 137 171 - -
Prci4g0045 295 MobiDBLite consensus disorder prediction 172 220 - -
Prci4g0045 295 MobiDBLite consensus disorder prediction 224 238 - -
Prci4g0045 295 CDD SANT 84 124 IPR001005 -
Prci4g0045 295 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Prci4g0045 295 SMART sant 25 75 IPR001005 -
Prci4g0045 295 SMART sant 78 126 IPR001005 -
Prci4g0045 295 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Prci4g0045 295 Pfam Myb-like DNA-binding domain 84 124 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0045 Prci-Chr4 418478 420048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0045 11 259 MYB Transcription Factor Family AT3G13540 53.307 3.51e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci4g0045 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0045 K09422 - cave:132163954 317.005