Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci499g0001 ATGATGAATTTAGCCCCTGTTACTCCCGCTGCTCCTAGAAATGTTGCAGCCCCACCACCAATTCATAATGGCTCCACTCCTGTTGTCAAAACTCGCATATGCAATAAATATAATTCTGCAGAAGGCTGCAAATTTGGTGAGAAGTGTCATTTTGCACATGGTGAATGGGAACTTGGCAAGCCAATTGCTTCTTCAGTGGAAGATCATCGTGCTGTGGGACCTATTGCAGGCCGTATTGCTCCCAGCCGGATGGAGCCCCCACCTGGACCCATGGCTAGTTTTGGTGCCAATGCCACTGCCAAGATCAGTGTAGAAGCTTCCTTAGCTGGAGCAATCATTGGGAAGGGTGGTGTAAACTCTAAGCAGATTTGTCGCCAGACAGGAGCCAAGCTATCAATTCGGGATCATGAGTCAGATCCAAATCTCAGAAACATTGAACTTGAGGGAAGCTTTGAACAGATCAAGGAAGCTAGTAATATGGTGAAAGAGCTGCTCGCAACCATCTCAATGTCGGCACCGCCTAAAATCTCTGGTGTTCCTGGTGGCCCAGCCCCACCTGGAAGCAATTACAAGACCAAGCTATGTGAGAATTTTGCCAAAGGATCTTGTACCTTCGGAGATAGATGTCACTTTGCACACGGGGCAGCTGAACTGCGTAAAACAATAGTATGA 672 0.4762 MMNLAPVTPAAPRNVAAPPPIHNGSTPVVKTRICNKYNSAEGCKFGEKCHFAHGEWELGKPIASSVEDHRAVGPIAGRIAPSRMEPPPGPMASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIKEASNMVKELLATISMSAPPKISGVPGGPAPPGSNYKTKLCENFAKGSCTFGDRCHFAHGAAELRKTIV 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci499g0001 223 FunFam Zinc finger CCCH domain-containing protein 23 60 - -
Prci499g0001 223 Pfam KH domain 100 163 IPR004088 GO:0003723
Prci499g0001 223 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Prci499g0001 223 CDD KH-I_AtC3H36_like 100 165 - -
Prci499g0001 223 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 30 55 IPR000571 GO:0046872
Prci499g0001 223 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 190 214 IPR000571 GO:0046872
Prci499g0001 223 SUPERFAMILY CCCH zinc finger 188 220 IPR036855 GO:0046872
Prci499g0001 223 SUPERFAMILY CCCH zinc finger 27 59 IPR036855 GO:0046872
Prci499g0001 223 FunFam Zinc finger CCCH domain-containing protein 184 220 - -
Prci499g0001 223 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 86 167 IPR036612 GO:0003723
Prci499g0001 223 Gene3D K Homology domain, type 1 93 189 IPR036612 GO:0003723
Prci499g0001 223 MobiDBLite consensus disorder prediction 1 24 - -
Prci499g0001 223 SMART kh_6 96 166 IPR004087 GO:0003676
Prci499g0001 223 ProSiteProfiles Type-1 KH domain profile. 97 161 - -
Prci499g0001 223 PANTHER CCCH ZINC FINGER/TIS11-RELATED 129 220 IPR045877 GO:0003729
Prci499g0001 223 ProSiteProfiles Zinc finger C3H1-type profile. 189 216 IPR000571 GO:0046872
Prci499g0001 223 Gene3D - 22 60 - -
Prci499g0001 223 Gene3D - 190 221 - -
Prci499g0001 223 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Prci499g0001 223 SMART c3hfinal6 189 215 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci499g0001 KH_1 1.5e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci499g0001 - - pcin:129305106 368.237