Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci48g0005 ATGTATCGATCAGTCCCACCTTTGACAGCCATAGATAGATTCTTGTGGGGCCAGCAGTCACAGAATCACAAGACTTCTACTGTGTCGCCTAACAGTGAAAGATCGAGTTTCATCGATGGCTTTGAGCAGGCTTTGAACTGGACACGCACTCAAGTCCCACCATCGTGCTGCGGAAACAGAGTTCTGGGGAAGCATGATGGTGATGATACTGTGGGAAGGAGAATCAATAAGAAAGGGTCTCGTGTATCTTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAATTGGTGAGGTTGGTGAATCAATATGGTGTGAAGAAATGGGCTGAAATAGCAGAGAAATTGGATGGAAGAGCTGGCAAGCAGTGTCGAGAGAGATGGCACAATCATTTGCGCCCTGATATTAAGAGAGAAAGTTGGAGTGAAGAAGAAGAGAGGATATTGGTGGAAACACATGCCAAGGTGGGGAATCGTTGGGCAGAAATAGCGAAGAACATTCCAGGAAGAACAGAGAATGCAATCAAGAACCACTGGAATGCCACTAAAAGGAGGCAGAATTCCAAGAGAAAGAAGAAAATCACACACAAAGCACACAAAAAGCCACGTTCCTCTGTACTTGAAGACTGCATCAGAAGCAAGACCCTGATGAGTAACACTGTACAGCACATTGCAGAAAACCAGTCTGATGAACCCTCTTCTGAATTTGCTGTTGTTCATGGCAAATCTGCAATTGCTGAGCCATATGATGAGGAATTGCTCTTCTTGCAAGGTTTTTTAGCTGACAATCAGAATCAGAAACAGTCTCTTACTGATGCTGACCTCTCTGAGAATTCTTCAACTTCCTACTTGTTGGACTTTTGTCAAACTGATGGTGGACAGCATCTTATTGCTGACGTGACAACTGGGCCTGGATTTGTGTTTCCCATATCAAACCCAGATGACAAAATGAGCTTCTACGAGAGTTTCCTTGCTGAGAAGGTTGCCACTCCCATTAAAGACACCCAATCAGATCTTTATCTCTCTCACCTGCTCAATGGACCAACTTCCTCATCACTTTTGTGCGGGTATGGGAATCAAAACCTGAACGTGGACTTTCAAATGGGGTATCAAGATAGTTCAGGAGGAAAGCGAGAGATGGATTTGATGGAATTGGTTTCTTCTTCTAAGTTCTCTACTAGCATCAACTGTAGCATATGA 1200 0.44 MYRSVPPLTAIDRFLWGQQSQNHKTSTVSPNSERSSFIDGFEQALNWTRTQVPPSCCGNRVLGKHDGDDTVGRRINKKGSRVSLIKGQWTDEEDRKLVRLVNQYGVKKWAEIAEKLDGRAGKQCRERWHNHLRPDIKRESWSEEEERILVETHAKVGNRWAEIAKNIPGRTENAIKNHWNATKRRQNSKRKKKITHKAHKKPRSSVLEDCIRSKTLMSNTVQHIAENQSDEPSSEFAVVHGKSAIAEPYDEELLFLQGFLADNQNQKQSLTDADLSENSSTSYLLDFCQTDGGQHLIADVTTGPGFVFPISNPDDKMSFYESFLAEKVATPIKDTQSDLYLSHLLNGPTSSSLLCGYGNQNLNVDFQMGYQDSSGGKREMDLMELVSSSKFSTSINCSI 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci48g0005 399 MobiDBLite consensus disorder prediction 183 200 - -
Prci48g0005 399 Gene3D - 85 137 - -
Prci48g0005 399 SMART sant 85 134 IPR001005 -
Prci48g0005 399 SMART sant 137 185 IPR001005 -
Prci48g0005 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 136 IPR017930 -
Prci48g0005 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 187 IPR017930 -
Prci48g0005 399 FunFam Transcriptional activator Myb isoform A 85 137 - -
Prci48g0005 399 Pfam Myb-like DNA-binding domain 89 146 - -
Prci48g0005 399 SUPERFAMILY Homeodomain-like 83 179 IPR009057 -
Prci48g0005 399 ProSiteProfiles Myb-like domain profile. 133 183 IPR001005 -
Prci48g0005 399 ProSiteProfiles Myb-like domain profile. 81 132 IPR001005 -
Prci48g0005 399 Gene3D - 139 208 - -
Prci48g0005 399 PANTHER MYB PROTEIN-RELATED 77 205 - -
Prci48g0005 399 CDD SANT 89 132 IPR001005 -
Prci48g0005 399 MobiDBLite consensus disorder prediction 183 204 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci48g0005 1 395 MYB Transcription Factor Family AT5G58850 38.938 1.33e-78 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci48g0005 Myb_DNA-bind_6 5.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci48g0005 K09422 - gmx:100786295 318.546