Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci48g0004 ATGGCTGCTATGAATATAAACTCCTCTTTCTGTAGATTCTGGATTCTTCTGGCGTTGTTTGCTTTTGTGGATTCTTCCTGCAACATCACTGACCATGATTTGGTCTTAAAGGCCTTTCAATCCGTCTCTGGATTCAATGTTTCCTGGTTCCATAGGCGAGGTTCCAACTGTTCAAAGGCTTCTCGGATTACCACAATACAGCTTTCTTCCAAGAATCTGAGTGGGTCTATCTCATGGGCTTTTATCAGGAACATGTCCAACTTGCAGGTTCTCGATCTTTCTGGGAATTTTCTCCAAGGTCATATCCCTCGGTGGTTTTGGGCATTTCCCAGCTTATCAAAAGTTGATCTTTCGAATAACAAGTTTGGAGGGAGCATTGACCTCCAATCCCGCGCAGGAAACGTTTCGTTTTCATCGGTTCAAAGTCTCAATCTCTCTCACAACAGGTTCACTAATCAGCCTCAGCTCTCTGGGTTTACAAACCTCCGAATTCTCGACCTCTCGCATAACAATCTGAGGGCTCTCCCCTCTGGGTTTCAAAACCTCACCGGGCTACACCAACTCGACCTCTCAGGTTGCAATGTCAAAGCAAATGTGAAACCCATTGCTGTTCTGCGCTCACTGAATTACTTGGACTTGTCGAACAATTCTTTCAATGGTAGTTTCCCTTCCGATTTCCCTCCTCTGGAAAGGCTCAAGTTTTTCAACATTTCTCACAACAACTTCACGGCACTGGTTGACTTAAAGGAGTACAAGAAATTTGGGAAGTCAGCTTTTATTGACGCCGGGAACGGCTTCACCTACAATACATCCGAATCCGATACGCCCAGACTTGATCCACCTCCTCCACATGCTTTACAAGCCCCGACATCCCGCCACAAACACAAAACACTGGTTGTGGCAGTGTCCTCTGCTTCGGCATTTGTGCTGCTTCTGGTGAGTATATGGGTGTGTTGCATTTACAGAAAGAAGAGGCGACTGGCGAAGAAAAAGAGATGGGCAATCTCGAAGCCGGTGCCGTTGGGAATAAAGCTGGACATATTGGGTCCATTCGCATTCGAAACCGAATCAGGGAGCTCGTGGGTGGCGGACTTGAAAGAGCCGTCGTCGGCACCGGTGGTGATGTTCGAGAAGCCGTTGATGAACTTGAGCTTCAAGGACCTGATCGCGGCCACGTCACACTTCGGCAAAGAGTCGCTGCTGGCGGAGGGAAGGTGTGGGCCCGTGTACAGCGCCGTCGTCATCCCCGGTGACATCCACGTGGCAATCAAGGTCCTGGAAAATGCGAGAGACGTCGATAACGATGACGCCATCGCGCTGTTCCTTGACCTGTCCAAGCTCAAACACCCCAATTTATTGCCACCCTCCGGTTACTGCATTGCAGGCAGGGAGAAGCTGATTCTGTACGAGTTTATGTCAAATGGGGATTTGGGGAGATGGCTGCACGAGCTGCCAACTGGGCAGACTAACGTGGAGGACTGGACCGGTGACACGTGGGAGATTCAAAACGGCTCCGGATTGCAAGTCTCATCCCCGCCGGAGAAGATGAGTTGGCTGACACGACACCGTATTTCAGTCGGGATCGCGCGGGGGCTAGCATATCTTCACCACGCAGGGTCAAAGCCCGTCGTCCACGGCCACCTAGTGACATCGAATATCTTACTCGCCGACGACTTGGAGCCCCGAATCGCCGATTTCGGGATCGGGAACATCGGGAAGGAACCGCAGGGCCCGACTTGCACCACGGAGACGGACGTTTACTGCTTCGGGGTGGTGCTGATGGAGCTGTTGACTGGGAAGGCCGGCACGGCGGAGACGGTGGTTCGAGTGAGAAAGGCGGTAAGGGAGGGGCAAGGGGAGCGCGCGTTGGACGAGAGGCTGAGAGTGAGTTGCGACTGGGAAAGCGAGATGCTGGAGAGCCTCCGAGTGGCGTACTTGTGTACGGCCGAGTCTCCCGGGAAAAGGCCTACCATGCAGCAGGTCTTGGGTCTGCTCAAAGACATCCACCCACACGACCCGATTTGA 2025 0.5225 MAAMNINSSFCRFWILLALFAFVDSSCNITDHDLVLKAFQSVSGFNVSWFHRRGSNCSKASRITTIQLSSKNLSGSISWAFIRNMSNLQVLDLSGNFLQGHIPRWFWAFPSLSKVDLSNNKFGGSIDLQSRAGNVSFSSVQSLNLSHNRFTNQPQLSGFTNLRILDLSHNNLRALPSGFQNLTGLHQLDLSGCNVKANVKPIAVLRSLNYLDLSNNSFNGSFPSDFPPLERLKFFNISHNNFTALVDLKEYKKFGKSAFIDAGNGFTYNTSESDTPRLDPPPPHALQAPTSRHKHKTLVVAVSSASAFVLLLVSIWVCCIYRKKRRLAKKKRWAISKPVPLGIKLDILGPFAFETESGSSWVADLKEPSSAPVVMFEKPLMNLSFKDLIAATSHFGKESLLAEGRCGPVYSAVVIPGDIHVAIKVLENARDVDNDDAIALFLDLSKLKHPNLLPPSGYCIAGREKLILYEFMSNGDLGRWLHELPTGQTNVEDWTGDTWEIQNGSGLQVSSPPEKMSWLTRHRISVGIARGLAYLHHAGSKPVVHGHLVTSNILLADDLEPRIADFGIGNIGKEPQGPTCTTETDVYCFGVVLMELLTGKAGTAETVVRVRKAVREGQGERALDERLRVSCDWESEMLESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPHDPI 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci48g0004 674 PRINTS Leucine-rich repeat signature 205 218 - -
Prci48g0004 674 PRINTS Leucine-rich repeat signature 162 175 - -
Prci48g0004 674 Gene3D Phosphorylase Kinase; domain 1 355 471 - -
Prci48g0004 674 SMART LRR_typ_2 85 109 IPR003591 -
Prci48g0004 674 SMART LRR_typ_2 159 181 IPR003591 -
Prci48g0004 674 SMART LRR_typ_2 205 228 IPR003591 -
Prci48g0004 674 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 44 668 - -
Prci48g0004 674 ProSiteProfiles Protein kinase domain profile. 395 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci48g0004 674 Pfam Protein tyrosine and serine/threonine kinase 399 569 IPR001245 GO:0004672|GO:0006468
Prci48g0004 674 FunFam Calmodulin-binding receptor kinase CaMRLK 138 248 - -
Prci48g0004 674 Pfam Leucine rich repeat 139 194 IPR001611 GO:0005515
Prci48g0004 674 Pfam Leucine rich repeat 62 122 IPR001611 GO:0005515
Prci48g0004 674 Gene3D Transferase(Phosphotransferase) domain 1 577 671 - -
Prci48g0004 674 Gene3D Transferase(Phosphotransferase) domain 1 472 576 - -
Prci48g0004 674 ProSiteProfiles Leucine-rich repeat profile. 161 183 IPR001611 GO:0005515
Prci48g0004 674 SUPERFAMILY Protein kinase-like (PK-like) 385 668 IPR011009 -
Prci48g0004 674 Gene3D Ribonuclease Inhibitor 21 132 IPR032675 -
Prci48g0004 674 Gene3D Ribonuclease Inhibitor 133 251 IPR032675 -
Prci48g0004 674 FunFam Putative LRR receptor-like serine/threonine-protein kinase 356 471 - -
Prci48g0004 674 MobiDBLite consensus disorder prediction 271 290 - -
Prci48g0004 674 SUPERFAMILY L domain-like 52 245 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci48g0004 63 668 Receptor kinase-like Gene Family AT5G07280 31.620 8.64e-67 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Prci48g0004 PK_Tyr_Ser-Thr 3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci48g0004 - - gmx:100778920 900.197