Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci489g0004 ATGGGGAAGAAGAAGAAGAGGGCTTCAAAGGTGTGGTGTTACTATTGTGATCGGGAGTTCGATGACGAAAAGATTTTGGTTCAGCATCAGAAGGCTAAGCACTTCAAATGCCATGTCTGCCACAAGAAACTCTCCACTGCCGGCGGCATGGCCATTCACGTGCTTCAGGTTCACAAAGAAAGCGTCACCAAGGTGCCCAATGCAAAACCTGGTAGAGAGTCTACAGATATTGAAATATATGGGATGCAAGGGATTCCGCCAGATATCTTGGCCGCCCACTACGGAGATGATGAGGATGAAGCTCCATCAAAAGCAGCCAAAGTGGATATCCCATCAACTCAGCTTGTAGGTGGTGTTGTCCCAGCACCATTAGGCATGGGATATCCTCAGTCAACCTTGGGTACTATGCCACCTATTTATAATCCAGCGGTACCTGTGCCTCCTGCCACTTGGTCAGTTCCACCTCGACCTCAGCCTTGGTATCCGCAACCTCCATCTGTTTCCACCCCTCCTGCCCCATATGTACAGCAGCCATTATTTCCTGTCCAGAATGTGAGGCCACCTCTACCATCAACTGCTTCTCCTGCCCTTCCAACTTCTCAAGTTGCTCCTCCTGGATTGCCTCCAACATCTGCTCCAGTTTCACAACCATTGTTTCCTGTTGTTGGAAATAACCATACGATGGCCCAAAGTTCAACATTTTCTGCACCATCACTTTCTACCACTGTTCCATCTTCATTGCCTTCAAGTACCTCTGCTGATGCTTATTCCAGTGCTAACACAACTTCGACAAATAATTATCAAACACTAGGGGTTCCAGGAGGGACATCAAGCAACTCGCATTCTTATGCTTCTGGTCCAAATACTGGTGGACCTTCAATTGGACCACCCCCAGTAATTGCAAACAAAGCTCCTGCGACTCAACCAGCCACTAATGAGGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCCTTGCTAAAATACCAGGTGCATGATGAAACTAGCCAGATGAGCTCCATTGATGCAGCTATAGACAAGAGGATACTTGAAAGCAGGCTAGCTGGTCGAATGGCTTTTTAG 1101 0.475 MGKKKKRVXSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGDDEDEAPSKAAKVDIPSTQLVGGVVPAPLGMGYPQSTLGTMPPIYNPAVPVPPATWSVPPRPQPWYPQPPSVSIXPPAPYVQQPLFPVQNVRPPLPSTASPALPTSQVAPPGLPPTSAPVSQPLFPVVGNNHTMAQSSTFSAPSLSTTVPSSLPSSTSADAYSSANTTSTNNYQTLGVPGGTSSNSHSYASGPNTGGPSIGPPPVIANKAPATQPATNEVYLVWDDEAMSMEERRMSLLKYQVHDETSQMSSIDAAIDKRILESRLAGRMAF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci489g0004 368 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Prci489g0004 368 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Prci489g0004 368 MobiDBLite consensus disorder prediction 219 291 - -
Prci489g0004 368 SMART c2h2final6 12 35 IPR013087 -
Prci489g0004 368 SMART c2h2final6 36 59 IPR013087 -
Prci489g0004 368 Gene3D Classic Zinc Finger 2 66 - -
Prci489g0004 368 MobiDBLite consensus disorder prediction 187 308 - -
Prci489g0004 368 MobiDBLite consensus disorder prediction 203 217 - -
Prci489g0004 368 CDD SUF4-like 13 92 - -
Prci489g0004 368 PANTHER ZINC FINGER PROTEIN 207 1 368 - -
Prci489g0004 368 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci489g0004 1 366 C2H2 Transcription Factor Family AT1G30970 62.016 2.14e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci489g0004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci489g0004 - - gmx:100819009 568.54