Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci480g0002 ATGGCGAGAAGACCAAGCAAGAAGAACAAGACACTGATCCAAGACGCAAGAATCAAGCACGTCACCTTCTCCAAGCGTCGATTCGGAATCTTCAAGAAAGCCAGCGAGCTCTGTACCTTGTGCGCCGTGGAGATGGTTCTCATCATCTTCTCGCCAGGCGATCCAAAGATCGATCATGAAGAAAGGGCCGAACGAGAAGCTAGGTTGGCTGAACTGAACAAGCACTGCTGCGATCTGAATGCACAGTTGAAGGAAGAGAAGAAACGAGGGAAGGAGCTGAAGAAGAGAATGATGAATCTTCCAGATATCGAAAAGATGAACAGAGAGGAGCTGATGAAAATGAAGACGTCGCTGGAAGATCTGAGAGTCAGAGTACGCAATCGTAAAGAGGAGCTTTTAGCAGGGAAGGCTATGGAGGATGATGATGATCTGAGTTTGACGTTGGGTGGCGTATATTCTGCAGGAGAAGCTTCTTCAAGCTCAGCGAACAAGGGTGGCGGTGATATTAGTCTGAGTCTATCAGCTTTTGTTCCTAGGTGA 540 0.4778 MARRPSKKNKTLIQDARIKHVTFSKRRFGIFKKASELCTLCAVEMVLIIFSPGDPKIDHEERAEREARLAELNKHCCDLNAQLKEEKKRGKELKKRMMNLPDIEKMNREELMKMKTSLEDLRVRVRNRKEELLAGKAMEDDDDLSLTLGGVYSAGEASSSSANKGGGDISLSLSAFVPR 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci480g0002 179 Gene3D - 15 75 IPR036879 GO:0003677|GO:0046983
Prci480g0002 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 53 IPR002100 GO:0003677|GO:0046983
Prci480g0002 179 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Prci480g0002 179 MobiDBLite consensus disorder prediction 155 179 - -
Prci480g0002 179 ProSiteProfiles MADS-box domain profile. 13 51 IPR002100 GO:0003677|GO:0046983
Prci480g0002 179 Coils Coil 80 100 - -
Prci480g0002 179 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Prci480g0002 179 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Prci480g0002 179 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Prci480g0002 179 PANTHER MADS BOX PROTEIN 9 127 - -
Prci480g0002 179 SUPERFAMILY SRF-like 7 55 IPR036879 GO:0003677|GO:0046983
Prci480g0002 179 CDD MADS 7 54 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci480g0002 19 125 Type I MADS-box Gene Family AT2G24840 34.286 8.62e-17 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci480g0002 SRF-TF 2.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci480g0002 - - pcin:129297271 325.094