Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci47g0005 ATGGAACAGATGAGGATTGAGGTGGGTCTGGGAGGCATGTTGTGGAACGAGGACGAACGAGACATGGTTGCGGCGGTTCTGGGCACTCAAGCCTTCGATTACCTGGTAAACCACTCAGTTTCGAATGAGAATCTGTTAATGGCCATGGTGACAGACGAGAATCTCCAAAAGAAGCTGTCGGATCTCGTGGAGCGTTCAAACGTATCGAATTTCACCTGGAACTATGCCATTTTCTGGCAAATTTCTCAGTCAAAATCCGGCGAGTGGGTTCTGGGTTGGGGCGATGGGTGTTGCAGAGAACCCGATGACGGAGAAGAAGAGGGATTCAAAGGAATCCTGAGCCTTCGCGTGGAGGACGGGGTGCAGCAAAGGATGAGGAAGAGGGTGTTGCAGAAGCTTCACACGACCTTTGGCGGTTCAGAAGAAGACAATTACGTGTACGGATTAGACCGTGTGACTGATACTGAGTTGTTCTTTCTCGCTTCCATGTACTTCTCTTTCCCTCGTGGCTATGGAGGTCCAGGTAAGTGTCTTGCATCTGGTAAGCATTTATGGCTCACGGATGCACAGAAATCTCCAGTTGAGTACTGTGTGAGATCATTTCTGGTTAAATCAGCTGGAATCCAGACCGTGGTTTTGATCCCTACTGATAGGGGCGTGGTGGAACTGGGTTCCGCCAAGTTGGTCAAAGAGAACTTAGAATTGTTGCAGGCAATCAAATCGGAGTTCTCCATTGAATCCACATTCCCGAGGGCTAACAAGTCAATTCCGCCGCCTCCTCCTCCTCTGGCTCCGGCGACGACGGGGAGAAGAGATGAACTCACCATATTTCCGGCCTTAACCGCTTCTGACAAAGTTGAAGTAGTCCCGAAGATTTTTGGGCAGGATTTGAACAAGGCCAACCCGGTTCGAACCAATCATTTCAGAGAGAAACTTGCTATCAGGAAAATGGAGGAGAGGCCATGGTTAGGTGGAGGAGGAGGAGGAGGAGGAGGTCATCAACCCAATGGGCTTCATCCTCGCAATGGTGTTCCACCTTCAAGCTGGACACCGGCTAACAATGGCGTGAGGCAAGGCAGTCCTGTTGAAAGTTATGCACCTAGATTGTCGACGAGCAATGTGCCGGTTCTGGACCTTGTTAATGGGGTTAATAATTATCAGGTACAAAGGAAAGCGCCAATGCAGATTGATTTCTCAGGAGCTACTTCCAGGTCTGCTGTGACTGCTGTGAGACCCAATGGCGGCGAATCAGAGCAATCTGATGCTGACGCTTCGTTCAGGGAGGAGCTGCCGGGCGGAGGAGGAGGAGCCGATGAAAGGCGGCCGAGGAAGCGCGGAAGAAAGCCGGCAAACGGGAGGGAAGAACCTCTGAACCATGTGGAAGCTGAGAGGCAAAGGCGCGAGAAGCTGAACCAACGGTTCTATGCTTTACGAGCTGTGGTGCCTAATATCTCCAAGATGGACAAAGCCTCTTTGCTGGGAGACGCCATCGCCTACATCAATGAGCTCCAGGCCAAACTCAAGGCCATGGAATCTGAGAAAGAGATAATACTTGGAAGCACTTCGACTTCAAGGGATTCATCAACGGAGCCCAACTTTATACAGATTAATCAAACTCGTCCACAAGTGGAAATCCAAGCTGGCGGCGACGAGGTCATTGTGCGGGTGATCTCACCAATCAATTCTCACCCAGTCTCAGGAGTGATCAAAGCGCTTAAAGAAGCAAACGTGAATGTCTTGGATTCAAAACTCGCTGCCGCAGGTGAAGCCGTGTTCCATACGTTCGTGATCCAGCCTCAAGGACCTGAGCAGCTGACAAAGGAGAAGTTGATTGCTGCATTTTCCGGCGAATCCAACTTATCGCAGCCATTATCATTGACTGGCCATTAA 1890 0.5048 MEQMRIEVGLGGMLWNEDERDMVAAVLGTQAFDYLVNHSVSNENLLMAMVTDENLQKKLSDLVERSNVSNFTWNYAIFWQISQSKSGEWVLGWGDGCCREPDDGEEEGFKGILSLRVEDGVQQRMRKRVLQKLHTTFGGSEEDNYVYGLDRVTDTELFFLASMYFSFPRGYGGPGKCLASGKHLWLTDAQKSPVEYCVRSFLVKSAGIQTVVLIPTDRGVVELGSAKLVKENLELLQAIKSEFSIESTFPRANKSIPPPPPPLAPATTGRRDELTIFPALTASDKVEVVPKIFGQDLNKANPVRTNHFREKLAIRKMEERPWLGGGGGGGGGHQPNGLHPRNGVPPSSWTPANNGVRQGSPVESYAPRLSTSNVPVLDLVNGVNNYQVQRKAPMQIDFSGATSRSAVTAVRPNGGESEQSDADASFREELPGGGGGADERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKAMESEKEIILGSTSTSRDSSTEPNFIQINQTRPQVEIQAGGDEVIVRVISPINSHPVSGVIKALKEANVNVLDSKLAAAGEAVFHTFVIQPQGPEQLTKEKLIAAFSGESNLSQPLSLTGH 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci47g0005 629 MobiDBLite consensus disorder prediction 407 465 - -
Prci47g0005 629 MobiDBLite consensus disorder prediction 433 465 - -
Prci47g0005 629 MobiDBLite consensus disorder prediction 250 269 - -
Prci47g0005 629 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 457 517 IPR036638 GO:0046983
Prci47g0005 629 MobiDBLite consensus disorder prediction 319 367 - -
Prci47g0005 629 CDD bHLH_AtAIB_like 451 517 - -
Prci47g0005 629 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 55 243 IPR025610 -
Prci47g0005 629 Coils Coil 493 520 - -
Prci47g0005 629 FunFam Transcription factor bHLH13 447 520 - -
Prci47g0005 629 MobiDBLite consensus disorder prediction 341 367 - -
Prci47g0005 629 PANTHER MYC 29 613 IPR045084 GO:0003700|GO:0006355
Prci47g0005 629 Gene3D - 448 517 IPR036638 GO:0046983
Prci47g0005 629 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 454 503 IPR011598 GO:0046983
Prci47g0005 629 SMART finulus 460 509 IPR011598 GO:0046983
Prci47g0005 629 Pfam Helix-loop-helix DNA-binding domain 458 504 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci47g0005 8 617 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 47.589 7.62e-180 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci47g0005 bHLH-MYC_N 2.1e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci47g0005 - - pcin:129291836 1222.99