Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci453g0001 ATGACCAACCAAGCCTCTTCCCCTGAAACTGAAACTACCAGCCCTAGCGACTCCTCTTCTTCTTGTTCTTCTTCTTCTTTCCCATCTTCTTCATCTGAATTATCAAACCCTACTTCCGATTCTCAGACCCAGAAAAGTCAATCTCAGAGCCAACAAGAACGGAGCACTAGCAGACCCAAGAGAGCCAGAGACCCTTCTAGCAAGCATCCATCGTACCATGGCGTCCGAATGCGAAACTGGGGCAAATGGGTCTCTGAAATTCGCGAGCCTCGCAAGAAATCACGAATCTGGCTTGGCACTTTCGCCACGCCGGCAATGGCTGCTCGAGCCCATGACGTCGCCGCTCTGAGCATCAAGGGTGAATCCGCCGTCCTCAACTTCCCTCACTTAGCTTCTCTGCTTCCCAGACCTGTCACGCTCGCCCCACGTGACATCCAATTCGCCGCCGCCGAAGCAGCTGCCATGGTGAAATTCGACCCTGCTCAGTCGCCGTCTTCTTCACCATCATCGGAAGAAGCAGAGTCTTCAGAGCTGAGTGAGATTGTGGAGTTGCCCAACGTTGAGGAGAGCTTTGAATCGGTGGAGTCGTCGAGGAGTCACGAGTTTGTGTGGGTTGAGTCGATGGATTGTTGGGTGTACGATCCTCCATTAATGGAATTAGAGGAAGAGGGTTTCTTTGACCAGTTTTATGGAGGAGAAAGCTTTGAGATATCAATTTGGGATTATTAA 729 0.5103 MTNQASSPETETTSPSDSSSSCSSSSFPSSSSELSNPTSDSQTQKSQSQSQQERSTSRPKRARDPSSKHPSYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPAMAARAHDVAALSIKGESAVLNFPHLASLLPRPVTLAPRDIQFAAAEAAAMVKFDPAQSPSSSPSSEEAESSELSEIVELPNVEESFESVESSRSHEFVWVESMDCWVYDPPLMELEEEGFFDQFYGGESFEISIWDY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci453g0001 242 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Prci453g0001 242 MobiDBLite consensus disorder prediction 160 175 - -
Prci453g0001 242 MobiDBLite consensus disorder prediction 56 71 - -
Prci453g0001 242 MobiDBLite consensus disorder prediction 159 179 - -
Prci453g0001 242 SUPERFAMILY DNA-binding domain 71 129 IPR016177 GO:0003677
Prci453g0001 242 FunFam Ethylene-responsive transcription factor 2 70 129 - -
Prci453g0001 242 MobiDBLite consensus disorder prediction 1 75 - -
Prci453g0001 242 MobiDBLite consensus disorder prediction 1 55 - -
Prci453g0001 242 Gene3D AP2/ERF domain 71 129 IPR036955 GO:0003700|GO:0006355
Prci453g0001 242 CDD AP2 70 130 IPR001471 GO:0003700|GO:0006355
Prci453g0001 242 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Prci453g0001 242 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 46 191 - -
Prci453g0001 242 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Prci453g0001 242 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Prci453g0001 242 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci453g0001 32 225 AP2-EREBP Transcription Factor Family AT5G11590 51.643 4.74e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci453g0001 AP2 6.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci453g0001 K09286 - pcin:129289324 367.081