Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci450g0005 ATGGGTTCTTCGGAGAACCCCAATTGGGTATTCGATTACGGTTATTTAGACGACATTCCCGTCCCTGGTGGTGACCTTCCTTCCCTTGACCCGCCCAGTTTTGTTTGGCCCCATCATTCCCTCACTGCTCCTCCTGCTGATTTCAGTACAGAGTTGGATGATACCTATGGGAATTCTGATGTTCTTAAGGAACCTGGGTCAAGAAAACGCCTAAGGTCAGGACCCAGCAATTCATCTGGAACCAAAGCATGTAGAGAGAAATTGAGGAGGGATCGACTGAATGACAGGTTCCTAGAATTGGGTTCTATCCTTGATCCTGGCAGGCCTGCCAAAGACAAGGTTGTCATATTAAGCGATGCAGTTCGAGTGCTCTCTCAGCTAAGAGACGAGGCTCTGAAGCTTAGAGAGTCCAATGAGAATCTGCAGAAGAAAATAAATGAATTGAAGGCTGAGAAAAATGAGCTCCGCGATGAGAAGCAGCAGCTAAAATTGGAGAAAGATAACATTGAGCGGCAAGTCAAAGCCTTGAATTCACAACCAAGCTTCCTGCCTCACCCTCCCACCCTCACAGCTCCATTTCCAACACCAGGACCAGTTCTTGGGGGCAAGATGGTGCCATTCATTCGTTACCCAGGAGTTTCAATGTGGCAGTTCTTACCCCCTGCTGCTGTTGACACCTCACAGGACCATCTACTTCGTCCCCCAGTCGCCTAA 714 0.486 MGSSENPNWVFDYGYLDDIPVPGGDLPSLDPPSFVWPHHSLTAPPADFSTELDDTYGNSDVLKEPGSRKRLRSGPSNSSGTKACREKLRRDRLNDRFLELGSILDPGRPAKDKVVILSDAVRVLSQLRDEALKLRESNENLQKKINELKAEKNELRDEKQQLKLEKDNIERQVKALNSQPSFLPHPPTLTAPFPTPGPVLGGKMVPFIRYPGVSMWQFLPPAAVDTSQDHLLRPPVA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci450g0005 237 Coils Coil 124 179 - -
Prci450g0005 237 Pfam Helix-loop-helix DNA-binding domain 81 127 IPR011598 GO:0046983
Prci450g0005 237 Gene3D - 78 157 IPR036638 GO:0046983
Prci450g0005 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 147 IPR036638 GO:0046983
Prci450g0005 237 CDD bHLH_AtILR3_like 82 156 - -
Prci450g0005 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 127 IPR011598 GO:0046983
Prci450g0005 237 PANTHER BHLH TRANSCRIPTION FACTOR 5 237 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Prci450g0005 237 SMART finulus 83 133 IPR011598 GO:0046983
Prci450g0005 237 MobiDBLite consensus disorder prediction 45 85 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci450g0005 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 53.878 2.24e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci450g0005 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci450g0005 - - tcc:18597043 347.436