Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci42g0004 ATGACCCCCTCGGAGAAATCAACCTTTACAAGGATCCCCCCTAGCTGCTTCAGCAGGACTTTGGGCCCTACCATGCTCCGCTGGATTCTGAACCTGCCGATGTCGCCGGAGGCTTTTGCCAGCAAGGAAATCTGCGACATGTTCATGGACAGGATCTTTAGTAATTTTGGAAGAAAGAACGATGATGCTGCAAAGGTGGTAGTGGAGGATGATGTTGCAGAGGTGGTAGTGGTCGATGATGTTGCAGAGGTGGTAGTGGACGATGGTACTGGGGCTAGTGATGACAATAATGGATGTCCGATTTGTTTGGAGGAGATGATGAAGACGGGAAAGGAAGTGAAACTTGTGGCCTGCGAGACGTGTCAGAGTGTGGTTCATGAACGGTGCTTCGTCGAGTGGAAGAAAACCAAAGAGAACAAGGCATCACTTACGTGTGTCATTTGTAGAGCTCCATGGAAGAGCAATCAAAATCTCGATGGTTCTGTTATTGACTTTGCAAATGTTTGA 507 0.4813 MTPSEKSTFTRIPPSCFSRTLGPTMLRWILNLPMSPEAFASKEICDMFMDRIFSNFGRKNDDAAKVVVEDDVAEVVVVDDVAEVVVDDGTGASDDNNGCPICLEEMMKTGKEVKLVACETCQSVVHERCFVEWKKTKENKASLTCVICRAPWKSNQNLDGSVIDFANV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci42g0004 168 ProSiteProfiles Zinc finger RING-type profile. 99 149 IPR001841 -
Prci42g0004 168 ProSiteProfiles Zinc finger RING-CH-type profile. 91 155 IPR011016 GO:0008270
Prci42g0004 168 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 67 156 IPR039903 GO:0061630
Prci42g0004 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 156 IPR013083 -
Prci42g0004 168 Pfam Ring finger domain 99 149 IPR001841 -
Prci42g0004 168 SUPERFAMILY RING/U-box 98 155 - -
Prci42g0004 168 ProSitePatterns Zinc finger PHD-type signature. 99 148 IPR019786 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci42g0004 65 158 C3H Transcription Factor Family AT1G50440 34.021 9.82e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci42g0004 - - pcin:129295063 303.523