Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci42g0003 ATGCTCCGCTGGATTCTGAACCTGCCGATGTCGCCGGAGGCTTTTGCCAGCAAGGAAATCTGCGACATGTTCATGGACAGGATCTTTAGTAATTTTGGAAGAAAGAACGATGATGCTGCAAAGGTGGTAGTGGAGGATGATGTTGCAGAGGTGGTAGTGGTCGATGATGTTGCAGAGGTGGTAGTGGACGATGGTACTGGGGCTAGTGATGACAATAATGGATGTCCGATTTGTTTGGAGGAGATGATGAAGACGGGAAAGGAAGTGAAACTTGTGGCCTGCGAGACGTGTCAGAGTGTGGTTCATGAACGGTGCTTCGTCGAGTGGAAGAAAACCAAAGAGAACAAGGCATCACTTACGTGTGTCATTTGTAGAGCTCCATGGAAGAGCAATCAAAATCTCGATGGTTCTGTTATTGACTTTGCAAATGTTTGA 435 0.469 MLRWILNLPMSPEAFASKEICDMFMDRIFSNFGRKNDDAAKVVVEDDVAEVVVVDDVAEVVVDDGTGASDDNNGCPICLEEMMKTGKEVKLVACETCQSVVHERCFVEWKKTKENKASLTCVICRAPWKSNQNLDGSVIDFANV 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci42g0003 144 ProSiteProfiles Zinc finger RING-type profile. 75 125 IPR001841 -
Prci42g0003 144 ProSiteProfiles Zinc finger RING-CH-type profile. 67 131 IPR011016 GO:0008270
Prci42g0003 144 ProSitePatterns Zinc finger PHD-type signature. 75 124 IPR019786 -
Prci42g0003 144 SUPERFAMILY RING/U-box 74 131 - -
Prci42g0003 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 132 IPR013083 -
Prci42g0003 144 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 70 132 IPR039903 GO:0061630
Prci42g0003 144 Pfam Ring finger domain 75 125 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci42g0003 41 134 C3H Transcription Factor Family AT1G50440 34.021 7.57e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci42g0003 - - pcin:129295063 253.832