Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci423g0004 ATGCAAATGGCTCTCAATAAGAATCTTGATGGTGCTGATGCTATACTTGTGGGTGGTCTACCTGATTACATGACAGAAACACAGATCAGGGAATTTCTTGAGACTTTTGGTCCACTTCGTGGCTTTGAATTGGTGAAAGATAGAGATACTCGAGCATGCTGTGTATATCAAGATCCTGCAGTTACAGATATTGTTTGTGTTGCTCTGAATGGAATAAAATCTGGAGATAAGACTCTTACTGTTAGACGAGCTTGTCAAGCTGAAAACCAGTCAAAACCTGCACTACAGAGAGTCATGTTTCCACAAGAATTAGCGGCAACGAAGGTTAAGGTTGCTAGTTTAAGCCAGGCTATATCTGCTGCTGCTGATGGACTTGATGGTCCTGATCGTTTATTTGTGGGTGGTATTCCTGATTACTTTAGAGAAGCAGAGATCAGGACACTTCTAGAGACTTTTGGTCCACTTCGGGGCTTCGAATTGGTGAAAGATAGAGATACAGGAATTTCAAAGGGTTATGCATTCTGTGCTTATCAAGATCCTGTGGTAACAGATATTGCTTGTGCTGCTATAAATGGAATAAAATTTGAAGACAAGACGCTCATACTTAGACGAGCGCCAAAACCTGAGCAAGAAGGCAGATTAAGTCATGCACTACAGAGACTCACGCTTCAGCCAGAATCAGTGGCAACGAAGGTTGTTCGTATAAGTCAGGCTATATCTACTACTGATCTGAAAGATGATAAGGACTGTGAAGATATTGTAAGATGA 768 0.4141 MQMALNKNLDGADAILVGGLPDYMTETQIREFLETFGPLRGFELVKDRDTRACCVYQDPAVTDIVCVALNGIKSGDKTLTVRRACQAENQSKPALQRVMFPQELAATKVKVASLSQAISAAADGLDGPDRLFVGGIPDYFREAEIRTLLETFGPLRGFELVKDRDTGISKGYAFCAYQDPVVTDIACAAINGIKFEDKTLILRRAPKPEQEGRLSHALQRLTLQPESVATKVVRISQAISTTDLKDDKDCEDIVR 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci423g0004 255 Gene3D - 9 59 IPR012677 -
Prci423g0004 255 Gene3D - 125 180 IPR012677 -
Prci423g0004 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Prci423g0004 255 Gene3D - 7 81 IPR012677 -
Prci423g0004 255 Gene3D - 122 200 IPR012677 -
Prci423g0004 255 SMART rrm1_1 14 82 IPR000504 GO:0003723
Prci423g0004 255 SMART rrm1_1 130 203 IPR000504 GO:0003723
Prci423g0004 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 200 IPR000504 GO:0003723
Prci423g0004 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 79 IPR000504 GO:0003723
Prci423g0004 255 CDD RRM2_U2AF65 129 205 - -
Prci423g0004 255 SUPERFAMILY RNA-binding domain, RBD 15 92 IPR035979 GO:0003676
Prci423g0004 255 PANTHER RNA-BINDING PROTEIN 119 254 - -
Prci423g0004 255 SUPERFAMILY RNA-binding domain, RBD 126 211 IPR035979 GO:0003676
Prci423g0004 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 86 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci423g0004 15 230 Eukaryotic Initiation Factors Gene Family AT1G71770 22.273 9.49e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci423g0004 K12837 - pcin:129317105 291.197