Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci423g0003 ATGCAAATGGCTCTGAACAAGAAGAATCTTGATGGTGCTGATGCTGTAATTGTGAGTGGTCTTCCTGACTACATTACAGAAACACAGATGAGGGAATTTCTTGAGACTTTTGGTCCAATTCGGGGCTTTGAATTGGTGAAAGCTAGAGATACTCGAAATTCAGAAAGTTATGCATGCTGTATATATCAAGATCCTGCAGTTACAGATATTGTTTGTGCTGCTCTGAATGGAATAAAATCTGGAGATAAGACTCTTACTGTTAGACGACCTAATCAAGGTGAAAACCAGACAAAACCTGCACTAAAGAGAGTTATGTTTCAGCAAGAATTAGCAGCAACGAAGTCGAAGATCGCCAGTTCAAGCCTGGCTATATCTGCTGCTGATGGACTTGATGGTCCTGATTGTTTATTTGTGGGTGGTCTTCCTGATTACTTGAGAGAAACAGAGGTCAGGGCACTTGTAGAGACTTTTGGTCAACTTCGGGGCTTTGAATTGGTGAAAGATAGAGATACAGGAATTTCAAAGGGCTATGCATTCTGTGCTTATCAACATCCTGTGGTAACAGATATTGCTTGTGCTGCTTTGAATGGAATAAAATCTGGAGATAAGACTCTTATACTTAGAAGAGCGCCAAAACCTAAGCAAGAAAGCAGATTAACTCATGGACTTCAGAGGGCAACGAAGGTTGTTTGTCTAAGTCAGGCTATATCTGCTGCTGATCTGAAAGATGATAAGGACTATGAAGAGATTGTAGATGATATGAGAAGAGAGGGATCCAAATATGCTACAATTGTATTCACGCATCATGACATCAGGCCTCACACATAA 828 0.4058 MQMALNKKNLDGADAVIVSGLPDYITETQMREFLETFGPIRGFELVKARDTRNSESYACCIYQDPAVTDIVCAALNGIKSGDKTLTVRRPNQGENQTKPALKRVMFQQELAATKSKIASSSLAISAADGLDGPDCLFVGGLPDYLRETEVRALVETFGQLRGFELVKDRDTGISKGYAFCAYQHPVVTDIACAALNGIKSGDKTLILRRAPKPKQESRLTHGLQRATKVVCLSQAISAADLKDDKDYEEIVDDMRREGSKYATIVFTHHDIRPHT 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci423g0003 275 SMART rrm1_1 15 88 IPR000504 GO:0003723
Prci423g0003 275 SMART rrm1_1 135 208 IPR000504 GO:0003723
Prci423g0003 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723
Prci423g0003 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 205 IPR000504 GO:0003723
Prci423g0003 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 85 IPR000504 GO:0003723
Prci423g0003 275 Gene3D - 223 272 IPR012677 -
Prci423g0003 275 SUPERFAMILY RNA-binding domain, RBD 131 217 IPR035979 GO:0003676
Prci423g0003 275 PANTHER RNA-BINDING PROTEIN 125 265 - -
Prci423g0003 275 CDD RRM2_U2AF65 136 210 - -
Prci423g0003 275 Gene3D - 6 87 IPR012677 -
Prci423g0003 275 Gene3D - 10 65 IPR012677 -
Prci423g0003 275 Gene3D - 130 185 IPR012677 -
Prci423g0003 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 212 IPR000504 GO:0003723
Prci423g0003 275 Gene3D - 128 205 IPR012677 -
Prci423g0003 275 SUPERFAMILY RNA-binding domain, RBD 15 97 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci423g0003 16 221 Eukaryotic Initiation Factors Gene Family AT1G71770 23.786 7.74e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci423g0003 K12837 - pcin:129317354 286.574