Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci423g0002 ATGCAAATGGCTCTGAACAAGAAGAATCTTGATGGTGCTGATGCTGTAATTGTGAGTGGTCTTCCTGACTACATTACAGAAACACAGATGAGGGAATTTCTTGAGACTTTTGGTCCAATTCGGGGCTTTGAATTGGTGAAAGCTAGAGATACTCGAAATTCAGAAAGTTATGCATGCTGTATATATCAAGATCCTGCAGTTACAGATATTGTTTGTGCTGCTCTGAATGGAATAAAATCTGGAGATAAGACTCTTACTGTTAGACGACCTAATCAAGGTGAAAACCAGACAAAACCTGCACTAAAGAGAGTTATGTTTCAGCAAGAATTAGCAGCAACGAAGTCGAAGATCGCCAGTTCAAGCCTGGCTATATCTGCTGCTGATGGACTTGATGGTCCTGATTGTTTATTTGTGGGTGGTCTTCCTGATTACTTGAGAGAAACAGAGGTCAGGGCACTTGTAGAGACTTTTGGTCAACTTCGGGGCTTTGAATTGGTGAAAGATAGAGATACAGGAATTTCAAAGGGCTATGCATTCTGTGCTTATCAACATCCTGTGGTAACAGATATTGCTTGTGCTGCTTTGAATGGAATAAAATCTGGAGATAAGACTCTTATACTTAGAAGAGCGCCAAAACCTAAGCAAGAAAGCAGATTAACTCATGGACTTCAGAGGGCAACGAAGGTTGTTTGTCTAAGTCAGGCTATATCTGCTGCTGATCTGAAAGATGATAAGGACTATGAAGAGATTGTAGATGATATGAGAAGAGAGGGATCCAAATATGGTACATTGGTTAATGTTGTGATACCTCGGCCCCGACCAAATTGGGAACCATCACCACTTGGCGTTGGAAAGGTGTTTTTGGAGTATGCTGACATGGATGGTGCAACAATAGCACGAGCTCAGTTGAGTGGACGAACTTATGGTGGGAATCCAACAGTGGCAGCATTTTATGCTGAGAATGAATTTGCTGACTTGATTATAAAGCCTGGCTGTTTGTCATTGCCACTTAGCTTGGATTGA 1023 0.4164 MQMALNKKNLDGADAVIVSGLPDYITETQMREFLETFGPIRGFELVKARDTRNSESYACCIYQDPAVTDIVCAALNGIKSGDKTLTVRRPNQGENQTKPALKRVMFQQELAATKSKIASSSLAISAADGLDGPDCLFVGGLPDYLRETEVRALVETFGQLRGFELVKDRDTGISKGYAFCAYQHPVVTDIACAALNGIKSGDKTLILRRAPKPKQESRLTHGLQRATKVVCLSQAISAADLKDDKDYEEIVDDMRREGSKYGTLVNVVIPRPRPNWEPSPLGVGKVFLEYADMDGATIARAQLSGRTYGGNPTVAAFYAENEFADLIIKPGCLSLPLSLD 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci423g0002 340 Gene3D - 6 87 IPR012677 -
Prci423g0002 340 SUPERFAMILY RNA-binding domain, RBD 16 97 IPR035979 GO:0003676
Prci423g0002 340 PANTHER RNA-BINDING PROTEIN 125 324 - -
Prci423g0002 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 212 IPR000504 GO:0003723
Prci423g0002 340 Gene3D - 130 185 IPR012677 -
Prci423g0002 340 Gene3D - 10 65 IPR012677 -
Prci423g0002 340 SUPERFAMILY RNA-binding domain, RBD 135 321 IPR035979 GO:0003676
Prci423g0002 340 Gene3D - 128 205 IPR012677 -
Prci423g0002 340 Gene3D - 223 326 IPR012677 -
Prci423g0002 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723
Prci423g0002 340 SMART rrm1_1 15 88 IPR000504 GO:0003723
Prci423g0002 340 SMART rrm1_1 235 316 IPR000504 GO:0003723
Prci423g0002 340 SMART rrm1_1 135 208 IPR000504 GO:0003723
Prci423g0002 340 CDD RRM2_U2AF65 136 210 - -
Prci423g0002 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 205 IPR000504 GO:0003723
Prci423g0002 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 85 IPR000504 GO:0003723
Prci423g0002 340 CDD RRM3_U2AF65 227 316 - -
Prci423g0002 340 FunFam U2 snRNP auxiliary factor large subunit 224 326 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci423g0002 16 221 Eukaryotic Initiation Factors Gene Family AT1G71770 23.786 5.61e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci423g0002 K12837 - pcin:129317354 286.574