Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci406g0003 ATGGCTCCATCTAGAAAATCCAAAAGTGTCACTAACAAAGATAAAAATACAGACAATGTTAGCAAGACTAGGCCGCAGGGTAGTCCAGGAACTCAGAAGAAGAGAAAATTGGCTGACATGTTAGGACCTCAATGGAGTAAGGAGGAGCTAGAGTGTTTCTATGAAGCTTTCCGTAAATATGGGAAAGACTGGAAGAAGGTGGCTGCTGCTGTGCATAATAGATCTTTGGAAATGGTAGAAGCTCTATACTCTATGAATCGAGCATACTTGTCTCTTCCAGAGGGCACTGCTTCTGTGGTTGGACTCATAGCAATGATGACGGATCATTATAATGTACTGGGAGGAAGTGATAGTGGACAAGAAACCAACGAAGAAACAGAAGCATTTACAAAGCCTCCAAAATTTTCGCGGCAGAAATGTTCAGATGGCAACTATAAAGCATTAGATGGACATTTTTCAGATCATTCTCAGTCACATTCAGTTCTATCAGGTGATGGTTGCCTGTCATTGTTGAAGAAGAGGCATTCTGGAATAAGTTCTCATGCTGTTCGCAAAAGAACTCCCCGTGTCCCTGTTTCACATTCCATTGGTAAGGATATTGGTGAAAAGCGTTTTTCACCAGCTAGGCAAGGTTCCAGGAAAATGGTCGACGGTAATGATGTTGCTCATAAGATTGCATTAGCACTGACAGAGGCTTCACAAGTAGGCGGGTCTTCCAAAGTTTCTAGATCGCCAAACAATAAATCTAAGGGCATTATGTCATCACCTGGTCAGAATAACAAGAGGAAGCACACTAAATCAGAAGCAGCAGCATCCAAATTTTGCCATTCTGACTTGAATGAGGGTACCTCTGAATTGAGTTTAGGAAGCACGGGGTGTGGCAACGGAGATTATTCTCGAAAACTGAATCAACGGAGCAACAGAGTGAATGCCAGAAGAGGAAAACATGAAGAAAAGGGAACAAAATACTGCAGAAAAAAGTTCGAACTCAAAGGAAATGTGAATAAGCATTTGGATGATGTAAAGGAAGCTTCCAGTGGGACAGATGAAGATAAAGGACTGGATTTAATCAAGTATAAAATAGACACTAATTTTGCTGGCACCAAAAGTGCTAGGTCCTCTTTCAAGAGTCTCAGGAAGGAAAGTAGAAAAGTACTGCTTGAAAAAAAAGATGAAGGCTCTTCTTTTGATGCTCTGAATGCCTTGGCTGATCTGTCTTTGATGATGCCAGTTGCAAACCCTGACACCGAGTCACCTGTTCGGGTGATGGAAGAAAGCCAAGGAGTTGTTGATGAGTCTCAAGTGGAAACCGATCATGCAATTTTGAGTGATGAAAGCACTGCTTTAAGTAAACTGGGTTTGATTTCTTCTGATCATGGAGTTTTTGTTCCTCAAGAAGAAGGCGCCTTCCACCTTGATGCTAGAAAGAGGAAAAGAAGACAAACATCTTCAATATTGAAAGCTACTGACAACGTGACAAAGTCTGTTGCCAAGGGTAAGCGCTCTTCTATTTCTACACCACATTCAAGACAATTAAAGGTGGTACAACCCCCAGGAATGATGTCTTCAAGTAATGATGACAAAGGAGGAAGGGATGATTTGCTGCTATTACCCATAAAAGTTTCACCTACAGACAAAGCGGGTCTAGCAACCAAAGGAAGGCATAGGCGGAAGATGGAAAAACCAAAACCAATGATACAACAAGATAGAAAGGTGTCAGAAAATAATTTTAGTGGTCAACATATTAAATCCATTCTCCAGAACAGCGTATTGAGACACAAGGAAAAGCTTATTCATTGCCTGTCTTCACATCAAATTCGGCGATGGTGCACTTTTGAGTGGTTTTACAGTGCTATAGATTACCCATGGTTTGCAAAGATGGAGTTCATGGAGTACTTGGACCATGTTGGATTGGGGCATGTTCCTAGACTGACTCGTATTGAGTGGGGGGTCATTAGGAGTTCTCTTGGCAGACCTCGGAGGTTTTCTAAGCAATTTTTGGTAGAAGAAAAAACAAAGTTAAATCAATACCGGGACTCTGTTAGGGCACATTATGCAGAACTTCTTGCTGGTACCAGGGAAGGCCTTCCAACTGATTTGGCCAGGCCGTTAATTGTTGGACAGCGTGTCATTGCTATTCACCCAAAGACGAGAGAGATTCAAGATGGAAGCGTACTAACTGTTGACAACTGTAGGTGTCAGGTTCAGTTTGACCAGCCTGAGCTGGGGGTTGAATTTATCATGGATATTGACTGCATGCCTCTGAATCCTAATGAAAATATGCCAGCATCTCTGATAAGGCGCAGTGTGATTCCAGATAAACTAGATGACAACCTTATTGAGTTCAAGCTTAATGGGAAATTGAAACAAGGAAAGATTGAGGAGCACAGGATATTGTTCCCTAGCGAGAACTTTGATCATGTTGATGCTCCTTATATACCCCCCTCAGCTCATGGCGTCAAAAGTTTATTGAACCAGGGCATCTCTTCAAGTTCCAAATTGCAGGCTAATGTTGCTTGCAATGAGATCGGTAATGCCTTACTGTCAGCAAATTCTAAAGCTTTTTTTCATGAACATGTTCCATCCAAAGAAGCTGGCACAAATGCTGTTTTTGAGCTGGCTCGTGCTCTTCACAAAAAGGAAATTGTGCTGTCTGAACTGAAGCAAATGAATGATGAGGCATGTGAAAGACGGAAATATGGGGACCACTCTTTAAAGGATTCAGAGCCGTTTAAGAGGCATTATGCTGCAGCATTGTTGCAGTTAAATGAAGTGAACCAGCAGGTCTCTTCTGCCTTGTTTTGCATGAGACAGCATAACACATATCAGGGGAACTCTAATTTACGACCAAGGCCCACAGCTAATTTGGATGATCTTGGTGGTCATGCTAGTTCTTCGTATTGTTCAGCTTCTCACAACCAAAATTGTCAATCTCATATAGCTGAAATTATTGAAAGTTCTAAAAGAAGAGCCCGTACAATGGTTGGTGCAGCTATGCAGGCGATGTCATCTTTTAGTAAGACAGAGAGTAAGGTTGAAGGAATTGAGGAGGCAATTAATTTTATAAATAATCGGCTTTCAGTGGATGACCATGCTGCTCCATCCTCGCAATTCATGCCCACAGATTCTGTTCATGCCACACTAGTTTCTCAGGATCAGATGATTGCAAGTAAATCAAATCCTCTGCCAAGTAGTCATTTACAAGATCCTGAACTAAACAGCTCATCTGATCAAAATGAAGTGAAAATTCCCTCGGAACTTATTTCTCAATGTCTAGCTACATTGCTGATGATCCAGAAATGTACAGAAAGACATTTCCCACCTGCCGATGTTGCTCACGTGCTAGATTCTGCAGTCACAAGCTTGCAGCCATTTTGTTCAAAGAATCTTCCAATATATGGAGAGATACAGAAATGCATGGATGTCATCAGAAATCAGATATTGGCACTCATACCTACCCAAACTACCTAG 3471 0.4172 MAPSRKSKSVTNKDKNTDNVSKTRPQGSPGTQKKRKLADMLGPQWSKEELECFYEAFRKYGKDWKKVAAAVHNRSLEMVEALYSMNRAYLSLPEGTASVVGLIAMMTDHYNVLGGSDSGQETNEETEAFTKPPKFSRQKCSDGNYKALDGHFSDHSQSHSVLSGDGCLSLLKKRHSGISSHAVRKRTPRVPVSHSIGKDIGEKRFSPARQGSRKMVDGNDVAHKIALALTEASQVGGSSKVSRSPNNKSKGIMSSPGQNNKRKHTKSEAAASKFCHSDLNEGTSELSLGSTGCGNGDYSRKLNQRSNRVNARRGKHEEKGTKYCRKKFELKGNVNKHLDDVKEASSGTDEDKGLDLIKYKIDTNFAGTKSARSSFKSLRKESRKVLLEKKDEGSSFDALNALADLSLMMPVANPDTESPVRVMEESQGVVDESQVETDHAILSDESTALSKLGLISSDHGVFVPQEEGAFHLDARKRKRRQTSSILKATDNVTKSVAKGKRSSISTPHSRQLKVVQPPGMMSSSNDDKGGRDDLLLLPIKVSPTDKAGLATKGRHRRKMEKPKPMIQQDRKVSENNFSGQHIKSILQNSVLRHKEKLIHCLSSHQIRRWCTFEWFYSAIDYPWFAKMEFMEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSKQFLVEEKTKLNQYRDSVRAHYAELLAGTREGLPTDLARPLIVGQRVIAIHPKTREIQDGSVLTVDNCRCQVQFDQPELGVEFIMDIDCMPLNPNENMPASLIRRSVIPDKLDDNLIEFKLNGKLKQGKIEEHRILFPSENFDHVDAPYIPPSAHGVKSLLNQGISSSSKLQANVACNEIGNALLSANSKAFFHEHVPSKEAGTNAVFELARALHKKEIVLSELKQMNDEACERRKYGDHSLKDSEPFKRHYAAALLQLNEVNQQVSSALFCMRQHNTYQGNSNLRPRPTANLDDLGGHASSSYCSASHNQNCQSHIAEIIESSKRRARTMVGAAMQAMSSFSKTESKVEGIEEAINFINNRLSVDDHAAPSSQFMPTDSVHATLVSQDQMIASKSNPLPSSHLQDPELNSSSDQNEVKIPSELISQCLATLLMIQKCTERHFPPADVAHVLDSAVTSLQPFCSKNLPIYGEIQKCMDVIRNQILALIPTQTT 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci406g0003 1156 SMART DIRP_2 615 716 IPR033471 -
Prci406g0003 1156 Gene3D - 3 97 - -
Prci406g0003 1156 Coils Coil 873 893 - -
Prci406g0003 1156 MobiDBLite consensus disorder prediction 492 523 - -
Prci406g0003 1156 SMART sant 41 89 IPR001005 -
Prci406g0003 1156 MobiDBLite consensus disorder prediction 285 318 - -
Prci406g0003 1156 MobiDBLite consensus disorder prediction 1057 1079 - -
Prci406g0003 1156 MobiDBLite consensus disorder prediction 1 39 - -
Prci406g0003 1156 CDD SANT 45 79 IPR001005 -
Prci406g0003 1156 Pfam DIRP 614 715 IPR033471 -
Prci406g0003 1156 MobiDBLite consensus disorder prediction 233 260 - -
Prci406g0003 1156 SUPERFAMILY Homeodomain-like 41 87 IPR009057 -
Prci406g0003 1156 MobiDBLite consensus disorder prediction 492 530 - -
Prci406g0003 1156 Pfam Myb-like DNA-binding domain 44 79 IPR001005 -
Prci406g0003 1156 MobiDBLite consensus disorder prediction 233 270 - -
Prci406g0003 1156 MobiDBLite consensus disorder prediction 285 305 - -
Prci406g0003 1156 PANTHER LIN-9 1 1155 IPR010561 GO:0006351|GO:0017053
Prci406g0003 1156 MobiDBLite consensus disorder prediction 546 570 - -
Prci406g0003 1156 ProSiteProfiles SANT domain profile. 40 77 IPR017884 -
Prci406g0003 1156 Pfam LIN9 C-terminal 870 938 IPR045831 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci406g0003 DIRP 2.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci406g0003 - - pcin:129292382 2248.78