Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci404g0001 ATGGGTTGCATTAACTCTAAGAAGGCAATTGCCAGAGATTCACCTCAACATGTGCTTTCGGTATCGGCAACCACCGACAAGAGGTCTGCTGTTGCGGAGCCTCCTTCCAGAGTCCAATCTGGGGTTCTGATTTTTGGGACCAAAGCGGAGCAAGCATCGCAGGATCGGATACAGGATGGGAAAAGATTTAAGAGGAACAGTTCTAAAGGAACTGGCTCTTTAAGAATTTCGTATCGACTCGTGGAAGCGGAGCAGAATGCGGCCGGATGGCCTCCTTGGCTCACCTCTGTTGCAGGGGAAGCTATCCAAGGATGGGTGCCTCTCAAGGCAGATTCATTTGAGAAATTAGACAAGATTGGACAAGGTACGTATAGCAGTGTGTTCCGAGCACGGGTTGAAACTGGGAGGATGGTTGCCTTGAAGAAGGTGCACATTGAGAATTTTCATCCTGAGAGCATTAGGTTCATGGCAAGAGAAATAGCAATCCTACGTAGGCTTGACCACCCAAACATTATGAAATTGGAGGGTATAATTACATCACGACTATCAAGTAGCATATACCTTGTATTTGAATACATGGAACACGATCTTGCAGGCCTAGTTTCCTCTCCGGACATCAAGTTCAGTGAGACTCAGGTTAAATGTTACATGAGGCAATTGTTAAGTGGACTTGAACACTGCCACATCCATGGCGTCATGCACCGTGACATCAAAACATCCAATATATTGGTGAATAATGAGGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACCCTTAATAACAAGAACCCATTAACCAGCTGTGTAGTGACTCTATGGTATCGTCGTCCTCCTGAACTTTTGATGGGATCAACAAACTATGGAGTATCAGTGGATCTGTGGAGTGTAGGCTGTGTATTTGCAGAACTTTCTGGGAAGCCTCTTCTTAAGGGGAGAACTGAGGTTGAACAGTTACACAAAATATTTAAGCTTTGTGGCTCTCCACCTGATGAGTTCTGGAAAAAGTCTAAGCTTCCTCTTGCAACAATGTTTAAACCTCAGACTCATTATGAATGCACTCTAAGGGAGCAGTGCAAAGAATTTCCAGTTACTGCTGTAAATCTAATTGAGACTCTACTTTCCGTTGACCAAAGTAGGCGTGGGACTGCCTCCTCTGCCCTAATGTCTGAGTATTTCAGCACCGAGCCTTATGCTTGCGATCCATCAATTCTGCCAAAGTATCCACCTCACAAAGAAATGGATGTCAGGGATTTGGAAGAAGCACAAAGGTAA 1278 0.446 MGCINSKKAIARDSPQHVLSVSATTDKRSAVAEPPSRVQSGVLIFGTKAEQASQDRIQDGKRFKRNSSKGTGSLRISYRLVEAEQNAAGWPPWLTSVAGEAIQGWVPLKADSFEKLDKIGQGTYSSVFRAREXETGRMVALKKVHIENFHPESIRFMAREIAILRRLDHPNIMKLEGIITSRLSSSIYLVFEYMEHDLAGLVSSPDIKFSETQVKCYMRQLLSGLEHCHIHGVMHRDIKTSNILVNNEGVLKIGDFGLANTLNNKNPLTSCVVTLWYRRPPELLMGSTNYGVSVDLWSVGCVFAELFXGKPLLKGRTEVEQLHKIFKLCGSPPDEFWKKSKLPLATMFKPQTHYECTLREQCKEFPVTAVNLIETLLSVDQSRRGTASSALMSEYFSTEPYACDPSILPKYPPHKEMDVRDLEEAQR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci404g0001 427 CDD STKc_CDK9_like 113 396 - -
Prci404g0001 427 PANTHER CELL DIVISION PROTEIN KINASE 111 400 - -
Prci404g0001 427 FunFam probable serine/threonine-protein kinase At1g54610 100 195 - -
Prci404g0001 427 SMART serkin_6 113 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci404g0001 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Prci404g0001 427 MobiDBLite consensus disorder prediction 407 427 - -
Prci404g0001 427 SUPERFAMILY Protein kinase-like (PK-like) 107 402 IPR011009 -
Prci404g0001 427 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Prci404g0001 427 FunFam probable serine/threonine-protein kinase At1g54610 196 427 - -
Prci404g0001 427 MobiDBLite consensus disorder prediction 411 427 - -
Prci404g0001 427 Pfam Protein kinase domain 113 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci404g0001 427 ProSiteProfiles Protein kinase domain profile. 113 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci404g0001 427 Gene3D Transferase(Phosphotransferase) domain 1 196 427 - -
Prci404g0001 427 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci404g0001 105 427 Core Cell Cycle Gene Families AT5G10270 46.041 2.03e-102 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Prci404g0001 Pkinase 1.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci404g0001 - - qsa:O6P43_004446 637.106