Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci401g0003 ATGGATCTTGCGAGAAGGAGATTCTTGATTTCTGGGTCTCAGCCCCTCTCGCCATTATCAAGCCCAGTGAGTTCAATCCTTCGCCCACATTCGCATTCTGCGAGCGCCAGTTTCCCCATTATAGCAATCGCTATAATAGGAATACTAGCCACAGCTTTCTTGCTCGTCAGCTACTATATCTTCGTCATCAAGTGCTGCCTCAATTGGCACCGCATAGATCTCCTAAGACGATTCTCTCCGTCTCGGCGGCGAGAAGAGCCACCGATGGCTTACTCGCCGGGGGGCACAGAACCTCGAGGACTCGACGAGGCGGTGATCCGATTAATCCCAGTCATCCATTACAGAGCAGAGGAAAACAAAGAATCCGAAGAGCGAAGCTTCACGGAATGCTCTGTTTGCCTGAACGAGTTTCGCGAGAAGGAGAAGTTGAGGATTATACCGAATTGCAGCCACGTGTTCCACATAGATTGCATCGACGTTTGGCTTCAGAACAACGCCAATTGCCCGCTTTGCAGAACAAGCATTTCTCTATCCACCAGATTCCAAATCGATCAGATGCTGAATTCCAGACCATCCTCGCAAGATCGACGCCCGTATGGCGAAAATCTCAATGGCGGGGATGAAGATTTTGTGGTGATTGAACTCAGCACTAATGGTCACGATAGAAACCAGAGCTCGAATGGAACACAGGAAAGAGAAAACCCGCCTCGGGAGGTGAGTCCTTCGCCCAGGAAGATAACGGAGCAGAAGAAAAAACCATGGAAGTTTCAGAAAGTGACGAGCATGGACGATGAGTGCATCGATACCAGGGGAAAAGACGAGCAGTTTTCAGTGCAGCCCATAAGGAGGTCTTTCTCCATGGATTCTTCAAGGGATAGACAGTTGTACATGGCAGTTCAAGAAGCGCTGAAGAAACAGAACAGACAAGAAGCGAGTGAGGTATCATCGTCCTCCATTGAAGGGTGTAGCAGTGGTAGAGTCAAGAGGTCATTCTTTTCCTTCGGACATGGTAGTAGTAGATCCAGAAGTTCGGTCCTGCCTGTTTATGTGGACCACTGA 1059 0.492 MDLARRRFLISGSQPLSPLSSPVSSILRPHSHSASASFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRREEPPMAYSPGGTEPRGLDEAVIRLIPVIHYRAEENKESEERSFTECSVCLNEFREKEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLSTRFQIDQMLNSRPSSQDRRPYGENLNGGDEDFVVIELSTNGHDRNQSSNGTQERENPPREVSPSPRKITEQKKKPWKFQKVTSMDDECIDTRGKDEQFSVQPIRRSFSMDSSRDRQLYMAVQEALKKQNRQEASEVSSSSIEGCSSGRVKRSFFSFGHGSSRSRSSVLPVYVDH 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci401g0003 352 FunFam E3 ubiquitin-protein ligase ATL6 91 178 - -
Prci401g0003 352 SMART ring_2 130 171 IPR001841 -
Prci401g0003 352 SUPERFAMILY RING/U-box 120 180 - -
Prci401g0003 352 Pfam Ring finger domain 129 172 IPR001841 -
Prci401g0003 352 MobiDBLite consensus disorder prediction 218 254 - -
Prci401g0003 352 MobiDBLite consensus disorder prediction 237 254 - -
Prci401g0003 352 CDD RING-H2_EL5-like 129 172 - -
Prci401g0003 352 MobiDBLite consensus disorder prediction 218 236 - -
Prci401g0003 352 MobiDBLite consensus disorder prediction 332 352 - -
Prci401g0003 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 177 IPR013083 -
Prci401g0003 352 PANTHER RING-H2 FINGER PROTEIN ATL16 20 348 IPR044600 GO:0016567|GO:0016740
Prci401g0003 352 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci401g0003 29 351 C3H Transcription Factor Family AT1G04360 54.494 4.64e-109 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci401g0003 - - gmx:100775286 390.193