Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci400g0001 ATGGCTTCGGGGACGTCATCTTCTTATTGGTGCTACAGATGCAGTCGGTTTGTGAGGGTGCGGAGGCAGGACGCGGTGGTGTGTCCCGACTGCGACAGTGGATTCGTGGAGGAGATTGAGCAAATGCCTCGGCCTGCCTCCATCGTTGATTCGCGGCGGCGGAGGTTCCCGGCGGCTTCCATGTACATGATCGGCAACCGCCACCACCCCAATTCTGGACAGACTCTGCGTCCTGCGTTGAGGAGGGCTCGTCGGAGCGGTGGCGATCTTGCTATGGTTAATCCGGTTGTCGTGCTCCGCGGATCTCCTCAACGGGCGAGTCATGATTCCGGTGGAGGACACGGGCGTGGGTTCGAGCTTTACTACGAAGACGGCTCTGGTTCCGGTCTCCGGCCTTTGCCTTCGAATATGTCAGAGATGCTTCTGGGATCTGGAATCGACAGGCTTCTGGAACAGCTTTCTCAGATTGAAATGAACGGGATTTCTCGATACGAACCACCTCCGGTTTCCAAAGCCGCTATCGATTCATTGCCGACGATAGAGATTCATGAGGATCATCTGGCGACGGAATCACACTGTGCCGTCTGTATGGAGCCTTTTGAATCGGGCACAACTGCTCGCGAATTGCCTTGCAGGCACATTTATCATTCGGAATGCATCTTGCCGTGGCTTGCGCTCCGGAATACTTGCCCTGTTTGCCGGCAGGAGCTCCCGGCAGATACGCAGAACGTTAACGCTTCTGGGCATTCCCTCACTTGGAACGACGATGACAACGTGGGATTAACCATTTGGAGGCTTCCCGGCGGTGGCTTCGCTGTGGGCAGGTTCGCTGGTGGGAGAAGAAGTTCTTCTGATCGTGAGCTTCCTGCTGTGTATACAGAAATGGACGGTGGTATTGGAAACGGCGGCGAACCGAGGAGGGTGACTTGGTCGACGACGGAGGAGGATCGAGGAGGGGACAGAAGAGGTGGAGGATTTCGGAAAATGTTTCGCAATCTTTTTGGTTGCTTCACTCCTGGAGCTCGAGCTCACCCCTCTGCTTCTTCATCATCATCATCTTCTTCTTCTTCTCCAGAACCTCGAACCTTCAGGAGTAGTACTTCTCGTTATCGTCCCGTCGTGAATACCACAACACGTTCCCGAAGGACCTGGTCTCTGGACGGCAATGGCGGAACCAGACCTTGGTGA 1188 0.5522 MASGTSSSYWCYRCSRFVRVRRQDAVVCPDCDSGFVEEIEQMPRPASIVDSRRRRFPAASMYMIGNRHHPNSGQTLRPALRRARRSGGDLAMVNPVVVLRGSPQRASHDSGGGHGRGFELYYEDGSGSGLRPLPSNMSEMLLGSGIDRLLEQLSQIEMNGISRYEPPPVSKAAIDSLPTIEIHEDHLATESHCAVCMEPFESGTTARELPCRHIYHSECILPWLALRNTCPVCRQELPADTQNVNASGHSLTWNDDDNVGLTIWRLPGGGFAVGRFAGGRRSSSDRELPAVYTEMDGGIGNGGEPRRVTWSTTEEDRGGDRRGGGFRKMFRNLFGCFTPGARAHPSASSSSSSSSSSPEPRTFRSSTSRYRPVVNTTTRSRRTWSLDGNGGTRPW 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci400g0001 395 MobiDBLite consensus disorder prediction 278 326 - -
Prci400g0001 395 FunFam E3 ubiquitin-protein ligase RING1-like 155 240 - -
Prci400g0001 395 Pfam Protein of unknown function (DUF1117) 259 369 IPR010543 -
Prci400g0001 395 SMART ring_2 193 233 IPR001841 -
Prci400g0001 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Prci400g0001 395 MobiDBLite consensus disorder prediction 309 326 - -
Prci400g0001 395 ProSiteProfiles Zinc finger RING-type profile. 193 234 IPR001841 -
Prci400g0001 395 PANTHER SI:CH211-59O9.10 22 238 - -
Prci400g0001 395 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Prci400g0001 395 MobiDBLite consensus disorder prediction 343 387 - -
Prci400g0001 395 MobiDBLite consensus disorder prediction 342 395 - -
Prci400g0001 395 Pfam Ring finger domain 192 234 IPR001841 -
Prci400g0001 395 SUPERFAMILY RING/U-box 173 244 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci400g0001 132 243 C3H Transcription Factor Family AT5G01980 41.071 1.85e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci400g0001 K11982 - qsa:O6P43_014338 478.404