Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g4040 ATGAATTGCTTCCCCTGCTTCTCCTCTCGCAAAAGTAAGAAAAGCCATAGCAAGATGGAGCATGGTTCCGCGCCACCCGAAAACATTCCGTCTACACCGCCCGATGTGAAGAAACAAAAGCCAGAAAACCCAGGCCAAATTGATCCGGCAAGTATTAAAGCGCAAGCTTTCACCTTTCGGGAGCTAGCAACCGCGACAAAGAATTTTTGTCGCGAAGGCCTTCTGGGTGAAGGTAGCTTTGGCAGAGTCTACAAGGGCACGCTTCCCCCAACCGGCCAGGTGGTAGCTGTGAAGCAACTGGATAGAAATGGGGTGCCCGGAGACAGTAAGGAATTTCTGGTCGAGGTTTTGATGCTGAGTCTCTTGCACCATGAAAATCTAGTAGATCTCATCGGCTATTGCGCCGATGGGGATCAACGTCTTTTGGTTTACGAATTTATCACGGGGGGTTCCCTGGAAGAACATCTTCTCGAGGACGGACCAAATAATGGTCTACTAGATTGGATGACTAGGATGAAAATAGCGTACAATGCTGCGAGAGGACTGGAGTACTTGCACGACAAGGCCAACCCCCCAATCATATATAGAGACTTGAAGTCCTCAAATATCTTGCTAGACCATCACTCCAATCCTAAACTCTCTGATTTTGGATTGTTCAAGCTTGCCGGCGGACAGAAAGCCGGCCCCGCCCCTTCTATTGTTATGGGCACCTACGGATACTCTGCTCCAGAGTGCGTTACAACAGGCAATGTCACCCTGAAGTCGGATGTCTACAGTTTTGGAGTAATCCTGCTGGAGCTCATCACCGGACGGAGAGCCATCGACACCACAAGACCAAACCACGAACAAAACCTGGTGTCTTGGGCACAACCTTTTTTCAAAGACCCGAAAAGATTCCCAGACATGGCGGATCCAGACCTGGAGAGACATTTTCCAGAGAAGGACCTGAATCAAGCGGTGGCAATAGCAGCCATGTGCCTGCAGGAAGAAGCGGGAGCCCGTCCTTTGATGAGCGACGTCGTGACAGCTCTTAGTTTCCTTACAAGCGAAAGCTGA 1056 0.5009 MNCFPCFSSRKSKKSHSKMEHGSAPPENIPSTPPDVKKQKPENPGQIDPASIKAQAFTFRELATATKNFCREGLLGEGSFGRVYKGTLPPTGQVVAVKQLDRNGVPGDSKEFLVEVLMLSLLHHENLVDLIGYCADGDQRLLVYEFITGGSLEEHLLEDGPNNGLLDWMTRMKIAYNAARGLEYLHDKANPPIIYRDLKSSNILLDHHSNPKLSDFGLFKLAGGQKAGPAPSIVMGTYGYSAPECVTTGNVTLKSDVYSFGVILLELITGRRAIDTTRPNHEQNLVSWAQPFFKDPKRFPDMADPDLERHFPEKDLNQAVAIAAMCLQEEAGARPLMSDVVTALSFLTSES 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g4040 351 Pfam Protein kinase domain 72 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci3g4040 351 CDD STKc_IRAK 75 344 - -
Prci3g4040 351 ProSiteProfiles Protein kinase domain profile. 69 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci3g4040 351 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Prci3g4040 351 MobiDBLite consensus disorder prediction 1 48 - -
Prci3g4040 351 PANTHER OS07G0668900 PROTEIN 3 349 - -
Prci3g4040 351 FunFam Serine/threonine-protein kinase PBS1 147 351 - -
Prci3g4040 351 SMART serkin_6 69 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci3g4040 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Prci3g4040 351 SUPERFAMILY Protein kinase-like (PK-like) 46 346 IPR011009 -
Prci3g4040 351 FunFam probable serine/threonine-protein kinase RLCKVII 41 146 - -
Prci3g4040 351 PIRSF ILK 37 350 - -
Prci3g4040 351 Gene3D Phosphorylase Kinase; domain 1 41 146 - -
Prci3g4040 351 Gene3D Transferase(Phosphotransferase) domain 1 147 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g4040 Prci-Chr3 47992980 47995304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g4040 1 347 Glycoside Hydrolase AT3G07070 63.788 1.27e-155 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Prci3g4040 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g4040 - - gmx:100790911 500.36