Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3996 ATGGCGACTTCATCAACCTCTGTCGCTACATCTGTGTCTTCGCAATTCACCAACTTCAACGGTTCCTATTTCCCCGTGCCTTTTCACCTACAGCAATCCCTAGCAATGCAGTATGCGACACCATATGCGGCGGTTTCTGCGGCATCGCCAGCCGTGCAAATTTCTCCTGCTTCCCTTTATCCCTCTCCGGCACCGGTCGCTGGTTTGTATTCTCTGCCACAGTATCAGCAGGCGCAACAACTATTTCAAAGGGATGCACAGGCAATTACACCTGAAGCTCTTGAGAGTGTCAAGGCGGCCATTGCAAATAGTGAGATTGAGCATAAAGCGGAGCCCAAAAAGAAAGCAGTTCCTCGCAAAGCTGCTGGCCAAACATGGGAGGATCCCACTCTTGCAGACTGGCCAGAAAATGATTATCGGCTCTTTTGCGGTGATCTTGGTAATGAGGTGAATGATGATGTTCTTTCAAAAACATTTTCTCGATTTCCTTCCTTTAACATGGCACGGGTTGTCAGAGACAAGCGGACTGGAAAAACGAAGGGTTATGGATTTGTAAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTCTCAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCAATTAAGCTTCGCAAGAGTAAGTGGCAGGAGAGGACAGATTACGAGGCCCTGGAAAAACAGAAGAACCAAACTCAGAAGAAATCGAAATTGCCCAGGAAGAGTATCCTGCACAAATAA 744 0.4718 MATSSTSVATSVSSQFTNFNGSYFPVPFHLQQSLAMQYATPYAAVSAASPAVQISPASLYPSPAPVAGLYSLPQYQQAQQLFQRDAQAITPEALESVKAAIANSEIEHKAEPKKKAVPRKAAGQTWEDPTLADWPENDYRLFCGDLGNEVNDDVLSKTFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGNRPIKLRKSKWQERTDYEALEKQKNQTQKKSKLPRKSILHK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3996 247 SUPERFAMILY RNA-binding domain, RBD 123 218 IPR035979 GO:0003676
Prci3g3996 247 MobiDBLite consensus disorder prediction 223 247 - -
Prci3g3996 247 Gene3D - 74 214 IPR012677 -
Prci3g3996 247 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 60 232 - -
Prci3g3996 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Prci3g3996 247 SMART rrm1_1 140 213 IPR000504 GO:0003723
Prci3g3996 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Prci3g3996 247 CDD RRM_RBM42 133 215 IPR034215 -
Prci3g3996 247 FunFam RNA-binding protein 42 74 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3996 Prci-Chr3 47716679 47725463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3996 141 240 Eukaryotic Initiation Factors Gene Family AT1G71770 30.392 7.79e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3996 K25079 - qsa:O6P43_011258 380.178