Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3994 ATGAGGATTATGATAAAGGGTGGTGTTTGGAAAAACACTGAGGATGAAATCCTCAAAGCGGCTGTTATGAAATATGGTAAAAACCAGTGGGCTCGAATATCTTCGCTTCTGGTTCGCAAATCCGCCAAGCAATGTAAGGCTCGATGGTACGAGTGGCTTGATCCTTCCATTAAAAAGACTGAATGGACAAGAGAAGAGGATGAAAAGCTTCTTCATCTTGCTAAGCTTATGCCCACACAATGGAGAACAATTGCTCCAATTGTAGGCCGTACCCCTTCCCAGTGCCTTGAACGGTATGAGAAACTCCTTGATGCAGCCTGTGTTAAGGATGAGAACTATGAACCTGGTGATGACCCACGGAAATTGCGACCTGGTGAGATTGACCCAAACCCTGAGTCAAAGCCTGCACGGCCAGATCCTGTTGATATGGATGAGGATGAGAAGGAAATGTTGTCTGAAGCACGAGCTAGGTTAGCCAACACCAAGGGTAAGAAGGCAAAACGGAAAGCCAGGGAGAAACAACTAGAAGAAGCCAGGAGACTTGCATCTTTGCAAAAGAAGAGAGAGTTGAAGGCTGCTGGAATTGATATCAGGCAGCGGAGGAGGAAAAGGAAAGGAATAGACTACAATGCAGAAATCCCATTCGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTACTGATGAAGATAGACCAGTGGAACAGCCCAAGTTCCCTACCACAATTGAAGAACTTGAGGGAAAAAGAAGGGTTGATGTGGAAGCTCAGTTAAGAAAGCAAGACATTGCAAAGAATAAAATTGCTCAAAGGCAAGATGCCCCCTCTGCTATACTGCATGCCAACAAGCTCAATGACCCAGAAACAGTTAGAAAAAGGTCAAAACTGATGCTTCCACCACCCCAAATTTCTGACCATGAATTAGAAGAAATTGCAAAGATGGGTTATGCTAGTGACCTTGTGGGGAGTGATGAAATTACTGAAGGTAGTGGTGCAACACGTGCTCTTCTGGCTAATTATGCTCAGACCCCTAGCCAGGGAATGACTCCCTTGCGAACTCCTCAGAGAACACCAGCTGGTAAAGGAGATGCTATCATGATGGAAGCTGAGAATTTGGCAAGGTTGAGGGAGTCTCAAACGCCATTGTTGGGAGGAGATAACCCGGAGTTGCATCCTTCAGACTTTTCTGGGGTCACTCCTAAGAAAAAAGAAATTCAGACTCCAAATCCTATGTTGACTCCCTCTGCAACCCCTGGAGGTGCAGGCCTCACCCCTAGAAGTGGTATGACACCAGCAAGGGATGGCTTTTCTTTTGGCATGACCCCTAAGGGAACTCCTCTTAGGGATGAGCTTCATATCAATGAAGACATGGATATGCATGAGAGCACAAAACTTGAGCTGCGAAGACAAGCTGATCTCAAAAGAAGCTTGCGCTCTGGTTTAAGCAGTCTTCCACAGCCAAAGAATGAGTACCAGATAGTTATGCAACCAGCTCCAGAAGATGTTGAAGAACCTGAGGAAAAGATTGAAGAGGATATGTCTGACAGAATTGCTCGAGAAAAAGCTGAAGAAGAAGCTCGTCAACAAGCATTACTTAGAAAGCGATCAAAGGTTCTTCAAAGGGAGCTTCCTAGGCCTCCTGCTGCATCATTGGAACTGATAAGAAATTCTTTGATTATTGCTGATGGGGATAAGAGTTCCTTTGTTCCTCCTACTTCTATTGAGCAAGCTGATGAGATGATAAGAAAGGAGCTTCTAAGCTTACTGGAACATGATAATGCCAAGTACCCACTTGAGGAGAAAGTAAATAAGGAGAGGAAAAAAGGGGTCAAGCATGCTGCAAATGGGTCTGCTTTTGTCCCTCTGATTGAAGATTTTGAGGAAGATGAAATGAAAGATGCTGATCAGTTGATAAAGGAGGAGGCTTGGTATCTTAGTGTAGCAATGGGACATGAAAGTGAACCCCTCAATGAATTTGTTGAAGCACATAGAACTTGCCTTAATGATCTTATGTACTTCCCTACCCGTAATGCCTATGGGCTCTCAAGTGTTGCTGGAAACATGGAGAAGCTTGCAGCTTTGCAGAATGAATATGAGAATGTGAGAAAGAAGTTGGATGATGGCAAGGATAAGGTGGTACGCCTTGAGAAGAAGGTGATAGTTCTTACACAAGGCTATGAGATGAGGGCAAAGAGAAGTCTTTGGCCGCAAATTGAAGCCACATTCAAGCAGATGGACACTGCTGCAACAGAACTAGAGTGCTTCCAAGTTTTGCAAAAGCAGGAGCAGCTAGCTGCATCGCACAGAATAAACAATGTATGGGCTGAAGTAGAGAAGCAAAAGGAACTTGAGAAAATCTTACAAAAGAGATACGGGGATCGTCTGGCAGAACTGGAAAGGATTCAAAACATTATGGACCAATACAGGGCAGATTCTAACCGGGAAGAAGAAATTGCTGCTAGGAAGCATTCTCTTGAGTCAGCGGAGATTGCATCTGATGAAACGAGCATGCAGGGTATAGAGAATCATGAAAGTATATCCCACTCAGATGAGCATGGAAGCTCTATGGTAGTTAAGTCAACACATGATGAAACCTTAGGACAGCAAGTAGACTTGATACCAGCAGAGGCCACATCAGGCCCTGGAAATGATGTGGATGTGGATGTGGATGCTGAGAAAGAGCAAGCGATACTCAACACTGATGTCAAGCTAGATGCGCCAGCCGTGGCAGAGGAGTGGGTCAATGCAACAGTGGTACCAGGTAGGGGCATCGACAGTTGTATTGCCCACAGGGAGACCACTCTAGAAACTGGCGCTCCAAAGGATAGTGTTGAGAGATGTGGGGATGATCGAGATTTAAAGAATCCTGATAACACGGCCATAACTTCACATGATGACTAA 2898 0.4489 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRKGIDYNAEIPFEKRPPPGFFDVTDEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDHELEEIAKMGYASDLVGSDEITEGSGATRALLANYAQTPSQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGDNPELHPSDFSGVTPKKKEIQTPNPMLTPSATPGGAGLTPRSGMTPARDGFSFGMTPKGTPLRDELHINEDMDMHESTKLELRRQADLKRSLRSGLSSLPQPKNEYQIVMQPAPEDVEEPEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLIIADGDKSSFVPPTSIEQADEMIRKELLSLLEHDNAKYPLEEKVNKERKKGVKHAANGSAFVPLIEDFEEDEMKDADQLIKEEAWYLSVAMGHESEPLNEFVEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQNEYENVRKKLDDGKDKVVRLEKKVIVLTQGYEMRAKRSLWPQIEATFKQMDTAATELECFQVLQKQEQLAASHRINNVWAEVEKQKELEKILQKRYGDRLAELERIQNIMDQYRADSNREEEIAARKHSLESAEIASDETSMQGIENHESISHSDEHGSSMVVKSTHDETLGQQVDLIPAEATSGPGNDVDVDVDAEKEQAILNTDVKLDAPAVAEEWVNATVVPGRGIDSCIAHRETTLETGAPKDSVERCGDDRDLKNPDNTAITSHDD 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3994 965 Coils Coil 683 717 - -
Prci3g3994 965 CDD SANT_CDC5_II 55 106 IPR047240 -
Prci3g3994 965 FunFam CDC5 cell division cycle 5-like 5 59 - -
Prci3g3994 965 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 804 IPR047242 GO:0000398|GO:0000974
Prci3g3994 965 MobiDBLite consensus disorder prediction 399 413 - -
Prci3g3994 965 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Prci3g3994 965 MobiDBLite consensus disorder prediction 931 965 - -
Prci3g3994 965 FunFam CDC5 cell division cycle 5-like 60 120 - -
Prci3g3994 965 Coils Coil 797 817 - -
Prci3g3994 965 MobiDBLite consensus disorder prediction 934 965 - -
Prci3g3994 965 Coils Coil 167 187 - -
Prci3g3994 965 SMART sant 58 105 IPR001005 -
Prci3g3994 965 SMART sant 6 55 IPR001005 -
Prci3g3994 965 Pfam pre-mRNA splicing factor component 406 655 IPR021786 -
Prci3g3994 965 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Prci3g3994 965 Gene3D - 60 114 - -
Prci3g3994 965 Gene3D - 5 59 - -
Prci3g3994 965 Pfam Myb-like DNA-binding domain 10 70 - -
Prci3g3994 965 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Prci3g3994 965 MobiDBLite consensus disorder prediction 378 446 - -
Prci3g3994 965 CDD SANT 10 53 IPR001005 -
Prci3g3994 965 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Prci3g3994 965 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Prci3g3994 965 MobiDBLite consensus disorder prediction 113 160 - -
Prci3g3994 965 MobiDBLite consensus disorder prediction 113 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3994 Prci-Chr3 47670201 47675916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3994 1 833 MYB-Related Transcription Factor Family AT1G09770 76.766 0.0 1252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci3g3994 Myb_Cef 9.4e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3994 K12860 - gmx:100801352 1487.63