Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3989 ATGGCTTCCCATGCAACTCCCAATTCAAGAGTTATCAAGGCCTTCAATGCTATGAAGGACTTGGGAATTTCTAGTGATGAAGTGAAACCAGTGCTGCAAAAGCTGTTAAGATTGTATGACAAGAACTGGGAATATATTGAAGAAGATAACTATCGAACACTTATAGATGCATACTTTGAGCTTAAGGAAGATAAGGAAGCGGAAGGTAAGAGAAAAGCTCTCACTAGTGATCATGGTGGAGAAAAACAAATGCAACCATTGGCAAATAAAGATGACGTGCTTTTGTTAACTACGGACAACTCAAGACAAAAATTATCCACAAAAGATAATGAAATGCCTTTAAATACTTTTGGACAAGAAATTGTTGAAACATCTCAACCTTCGATGAGCAATACGAGACCTAAAATCATTCCTCAATTATTGAGAACAAGAATTAATGAGGTAGAAAGGATATCAAAGTTTCCTAGCATGTCTGTTACAAATAGAAGATCAAATTCAGAGAAAACATCTTCTACAAGGCATGGCGAAGGACTTGTTGATGAGCCAAGCTTTACTCTTATTCGAAGAGAAAATCTACCAAATGAACATAATAGGGGAGAGATAATGAAGCAAAAAACCAAACACAATAAGTTACATCTTGAATCCAGTTCAACAAGTTACAAAGGTTCTTATGAGGTTTTGACTAGAAATCATCCTGTCAAGTTGGTGTCTTCTTTGTATATGGATCTAAACAGTGCCATTGATGATTCTGCACACAATAACAACCCTGCAAGTAGTAAGACTAATATTGAAATTGCCTCTTCAACTTTGGGAGAAGTGAAAATTTCTTTAAACTGTGACCACGCACTTGAACAACCAAATTTCTATATTCCAAACTTAAGTACTGTGATGAAGTTCATGGAAGAGAAGTACCTTCAACCTACAAATATTGTTGGACCCCAAATTTCTATGGTGAATTTATTAAATAGTTTGTGTGAGAATTTTCTTAAATTAGGAATGCATGTGAATCAAAAGCATTCACATCCTGAGTTTAACAATGCAAATATATTAACAAATGGGCCACAACAAGCTATTGCTCAAGATGAGAAAAAGCTATTTCATTTTCTTAGTGACATAACAAAAGGCTCAGAAAAGGTGAAGATATCATTGATAGATGAGTATGGTAATGGGGAATTTCCAAATTTTAATTACACACCAAATAATATAATATATCAGAGTGCTAATGTAAATATTTCGCTGGCTCGTATTGCGGATGAAGGTTGTTGCTCAAGTTGCTTGGGAAACTGTCTTTCCCAATCATTACCTTGTGCATGTGCTCAAGAAACTGGTGGAGAGTTTGCTTACACGCTTCAGGGGTTATTAAAAGATGAATTTTTAATATCTTGCATATCTATGAAAAAAGAACCTCAAGCTCATCAATTGGTATATTGTCAAGAGTGTCCACTAGAGAGGTCTAAGAATGAATACATGCCTGAGCAATGTAAGGGACATCTAATCAGGAAATTCATTAAAGAATGTTGGAAGAAGTGTGGATGTGACATGCAATGCGGAAATCGTATAGTGCAACGAGGTTTAAGATGTAAATTGCAGGTGTTCTTTACTAGTGAAAAAAAGGGTTGGGGCCTTAGAACACTGGAAGATTTGCCTAAAGGATCCTTTATATGTGAATATGCTGGAGAAATATTAACTAACATGGAGTTGTATGAAAGAATTGTGCACAAAAATGGAAATGACAGGCATACATATCCCGTAACACTTGATGCAGATTGGGGCTCAGAAGGGGCATTAAAAGATGAGGAGGCATTGTGTCTAGATGCCACATATAATGGAAATGTTGCTAGGTTTATCAATCATAGATGCTCAGATGCAACTCTAATAGACATTCCTGTTGAAGTAGAGACTCCTGATCGTCATTATTACCATGATTATGGTATTGACTTTGATGATCATGATCATCCTATCAAAGCATTCCAATGTTGCTGTGGAAGCCCATTCTGTCGTGACAAGAAGCGGAAAGGGAAGCGAAAATTAGCGAAATGTCTATGA 2046 0.3627 MASHATPNSRVIKAFNAMKDLGISSDEVKPVLQKLLRLYDKNWEYIEEDNYRTLIDAYFELKEDKEAEGKRKALTSDHGGEKQMQPLANKDDVLLLTTDNSRQKLSTKDNEMPLNTFGQEIVETSQPSMSNTRPKIIPQLLRTRINEVERISKFPSMSVTNRRSNSEKTSSTRHGEGLVDEPSFTLIRRENLPNEHNRGEIMKQKTKHNKLHLESSSTSYKGSYEVLTRNHPVKLVSSLYMDLNSAIDDSAHNNNPASSKTNIEIASSTLGEVKISLNCDHALEQPNFYIPNLSTVMKFMEEKYLQPTNIVGPQISMVNLLNSLCENFLKLGMHVNQKHSHPEFNNANILTNGPQQAIAQDEKKLFHFLSDITKGSEKVKISLIDEYGNGEFPNFNYTPNNIIYQSANVNISLARIADEGCCSSCLGNCLSQSLPCACAQETGGEFAYTLQGLLKDEFLISCISMKKEPQAHQLVYCQECPLERSKNEYMPEQCKGHLIRKFIKECWKKCGCDMQCGNRIVQRGLRCKLQVFFTSEKKGWGLRTLEDLPKGSFICEYAGEILTNMELYERIVHKNGNDRHTYPVTLDADWGSEGALKDEEALCLDATYNGNVARFINHRCSDATLIDIPVEVETPDRHYYHDYGIDFDDHDHPIKAFQCCCGSPFCRDKKRKGKRKLAKCL 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3989 681 Pfam SET domain 539 623 IPR001214 GO:0005515
Prci3g3989 681 SUPERFAMILY SET domain 379 667 IPR046341 -
Prci3g3989 681 Gene3D SET domain 350 643 IPR046341 -
Prci3g3989 681 SMART set_7 527 650 IPR001214 GO:0005515
Prci3g3989 681 Gene3D - 2 64 IPR043017 -
Prci3g3989 681 CDD SET_SETDB-like 393 641 - -
Prci3g3989 681 Pfam Ubiquitin-binding WIYLD domain 9 63 IPR018848 -
Prci3g3989 681 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 9 678 - -
Prci3g3989 681 SMART preset_2 369 511 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Prci3g3989 681 Pfam Pre-SET motif 372 519 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Prci3g3989 681 MobiDBLite consensus disorder prediction 158 178 - -
Prci3g3989 681 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 676 IPR025776 -
Prci3g3989 681 ProSiteProfiles Pre-SET domain profile. 421 524 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Prci3g3989 681 ProSiteProfiles SET domain profile. 527 681 IPR001214 GO:0005515
Prci3g3989 681 MobiDBLite consensus disorder prediction 66 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3989 Prci-Chr3 47622340 47632157 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3989 503 641 C2H2 Transcription Factor Family AT2G23740 43.571 6.77e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci3g3989 Pre-SET 6.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3989 - - gsj:114402909 838.18