LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci3g3987	ATGGCTTCCCATGCAACTCCCAATTCAAGAGTTATCAAGGCCTTCAATGCTATGAAGGACTTGGGAATTTCTAGTGATGAAGTGAAACCAGTGCTGCAAAAGCTGTTAAGATTGTATGACAAGAACTGGGAATATATTGAAGAAGATAACTATCGAACACTTATAGATGCATACTTTGAGCTTAAGGAAGATAAGGAAGCGGAAGGTAAGAGAAAAGCTCTCACTAGTGATCATGGTGGAGAAAAACAAATGCAACCATTGGCAAATAAAGATGACGTGCTTTTGTTAACTACGGACAACTCAAGACAAAAATTATCCACAAAAGATAATGAAATGCCTTTAAATACTTTTGGACAAGAAATTGTTGAAACATCTCAACCTTCGATGAGCAATACGAGACCTAAAATCATTCCTCAATTATTGAGAACAAGAATTAATGAGGTAGAAAGGATATCAAAGTTTCCTAGCATGTCTGTTACAAATAGAAGATCAAATTCAGAGAAAACATCTTCTACAAGGCATGGCGAAGGACTTGTTGATGAGCCAAGCTTTACTCTTATTCGAAGAGAAAATCTACCAAATGAACATAATAGGGGAGAGATAATGAAGCAAAAAACCAAACACAATAAGTTACATCTTGAATCCAGTTCAACAAGTTACAAAGGTTCTTATGAGGTTTTGACTAGAAATCATCCTGTCAAGTTGGTGTCTTCTTTGTATATGGATCTAAACAGTGCCATTGATGATTCTGCACACAATAACAACCCTGCAAGTAGTAAGACTAATATTGAAATTGCCTCTTCAACTTTGGGAGAAGTGAAAATTTCTTTAAACTGTGACCACGCACTTGAACAACCAAATTTCTATATTCCAAACTTAAGTACTGTGATGAAGTTCATGGAAGAGAAGTACCTTCAACCTACAAATATTGTTGGACCCCAAATTTCTATGGTGAATTTATTAAATAGTTTGTGTGAGAATTTTCTTAAATTAGGAATGCATGTGAATCAAAAGCATTCACATCCTGAGTTTAACAATGCAAATATATTAACAAATGGGCCACAACAAGCTATTGCTCAAGATGAGAAAAAGCTATTTCATTTTCTTAGTGACATAACAAAAGGCTCAGAAAAGGTGAAGATATCATTGATAGATGAGTATGGTAATGGGGAATTTCCAAATTTTAATTACACACCAAATAATATAATATATCAGAGTGCTAATGTAAATATTTCGCTGGCTCGTATTGCGGATGAAGGTTGTTGCTCAAGTTGCTTGGGAAACTGTCTTTCCCAATCATTACCTTGTGCATGTGCTCAAGAAACTGGTGGAGAGTTTGCTTACACGCTTCAGGGGTTATTAAAAGATGAATTTTTAATATCTTGCATATCTATGAAAAAAGAACCTCAAGCTCATCAATTGGTATATTGTCAAGAGTGTCCACTAGAGAGGTCTAAGAATGAATACATGCCTGAGCAATGTAAGGGACATCTAATCAGGAAATTCATTAAAGAATGTTGGAAGAAGTGTGGATGTGACATGCAATGCGGAAATCGTATAGTGCAACGAGGTTTAAGATGTAAATTGCAGGTGTTCTTTACTAGTGAAAAAAAGGGTTGGGGCCTTAGAACACTGGAAGATTTGCCTAAAGGATCCTTTATATGTGAATATGCTGGAGAAATATTAACTAACATGGAGTTGTATGAAAGAATTGTGCACAAAAATGGAAATGACAGGCATACATATCCCGTAACACTTGATGCAGATTGGGGCTCAGAAGGGGCATTAAAAGATGAGGAGGCATTGTGTCTAGATGCCACATATAATGGAAATGTTGCTAGGTTTATCAATCATAGATGCTCAGATGCAACTCTAATAGACATTCCTGTTGAAGTAGAGACTCCTGATCGTCATTATTACCATCTTGCCTTCTTTACTAACAGGAAAGTGAATGCTTATGAGGAGTTGACATGGGATTATGGTATTGACTTTGATGATCATGATCATCCTATCAAAGCATTCCAATGTTGCTGTGGAAGCCCATTCTGTCGTGACAAGAAGCGGAAAGGGAAGCGAAAATTAGCGAAATGTCTATGA	2097	0.3639	MASHATPNSRVIKAFNAMKDLGISSDEVKPVLQKLLRLYDKNWEYIEEDNYRTLIDAYFELKEDKEAEGKRKALTSDHGGEKQMQPLANKDDVLLLTTDNSRQKLSTKDNEMPLNTFGQEIVETSQPSMSNTRPKIIPQLLRTRINEVERISKFPSMSVTNRRSNSEKTSSTRHGEGLVDEPSFTLIRRENLPNEHNRGEIMKQKTKHNKLHLESSSTSYKGSYEVLTRNHPVKLVSSLYMDLNSAIDDSAHNNNPASSKTNIEIASSTLGEVKISLNCDHALEQPNFYIPNLSTVMKFMEEKYLQPTNIVGPQISMVNLLNSLCENFLKLGMHVNQKHSHPEFNNANILTNGPQQAIAQDEKKLFHFLSDITKGSEKVKISLIDEYGNGEFPNFNYTPNNIIYQSANVNISLARIADEGCCSSCLGNCLSQSLPCACAQETGGEFAYTLQGLLKDEFLISCISMKKEPQAHQLVYCQECPLERSKNEYMPEQCKGHLIRKFIKECWKKCGCDMQCGNRIVQRGLRCKLQVFFTSEKKGWGLRTLEDLPKGSFICEYAGEILTNMELYERIVHKNGNDRHTYPVTLDADWGSEGALKDEEALCLDATYNGNVARFINHRCSDATLIDIPVEVETPDRHYYHLAFFTNRKVNAYEELTWDYGIDFDDHDHPIKAFQCCCGSPFCRDKKRKGKRKLAKCL	698

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci3g3987	698	Pfam	Ubiquitin-binding WIYLD domain	9	63	IPR018848	-
	Prci3g3987	698	SMART	set_7	527	667	IPR001214	GO:0005515
	Prci3g3987	698	Gene3D	SET domain	372	686	IPR046341	-
	Prci3g3987	698	Pfam	SET domain	539	661	IPR001214	GO:0005515
	Prci3g3987	698	CDD	SET_SETDB-like	393	661	-	-
	Prci3g3987	698	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	693	IPR025776	-
	Prci3g3987	698	SMART	preset_2	369	511	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Prci3g3987	698	Gene3D	-	2	64	IPR043017	-
	Prci3g3987	698	ProSiteProfiles	SET domain profile.	527	661	IPR001214	GO:0005515
	Prci3g3987	698	MobiDBLite	consensus disorder prediction	158	178	-	-
	Prci3g3987	698	FunFam	SET-domain containing protein lysine methyltransferase family protein	372	686	-	-
	Prci3g3987	698	ProSiteProfiles	Pre-SET domain profile.	421	524	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Prci3g3987	698	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	9	695	-	-
	Prci3g3987	698	MobiDBLite	consensus disorder prediction	66	86	-	-
	Prci3g3987	698	Pfam	Pre-SET motif	372	519	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Prci3g3987	698	SUPERFAMILY	SET domain	379	684	IPR046341	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci3g3987	Prci-Chr3	47622340	47632157	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci3g3987	503	684	C2H2 Transcription Factor Family	AT2G23740	39.572	4.24e-30	125

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Prci3g3987		Pre-SET	6.8e-16	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci3g3987	-		-	gsj:114402909	880.167