Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3948 ATGGATAGGGTGTTTTCGGTGGATGAAATATCCGATCAGTTCTGGTCGCCGCCGATGTCCACCGGAACCCATGAACCCTCCAAGATGAACCGCAGCGCCTCCGAGTGGGCCTTCCAGCGCTTCCTTCAGGAAGCTTCTGTTCCCTCCCCGACCTCTCCGGCCTCTTCTTCCTTTCCTCCTCACCGTAACGATGACCCTTCGCTTCATATCAAGGATCAACCTAAACAGGATCCCGCTCTGAATACGGGGGTCACGCCACTGCAGCCCAATGTGCCTTCTCCCGCTCCTTCTATTCCTAAAATTCCCGTCAATTCCGATGACTACCAGGCTTACCTCAAGACCAAACTCAATCTCGCCTGTGCGGCCGTCGCATTGTCTCGGCAACAGGGATCTTTAGGCAAAGCTCAAGATTCAGCTCCTTTTGTTGACAGTGGATCACAGGCTTCTGATTCTTCTCAAGTCGGACCTCAGGCTACTTTTAAAGGATCTGGTATATCTGGTCCATATGGAAGTGATCCATCTAAATTACTAGATAAAGATACGAAAGCACCAGTTGGAATTCCTTCCTTACCTGTGATCCAAAAGAAGCCTGCTATTGCAAACAAGCCAACAACAAGTGGATCCTCAAGGGAGCTGTCGGATGATGATGATGTTGAGGGAGAAACGGAGATGACTGAAAATATGGACCCTGCTGATGCAAAACGAGTAAGGAGGATGCTTTCCAATAGGGAATCTGCTAGGCGTTCAAGAAGGAGAAAGCAGGCTCATTTAACTGAGCTCGAGACACAGGTTTCTCAATTAAGAGTTGAAAATTCATCCTTGTTAAAGCGTCTTACTGATGTAAGCCATAAGTACAATGAATCTGGTGTTGACAACAGAGTATTAAAAGCTGACATTGAAACATTGAGAGCAAAGGTGAAGATGGCTGAAGAGACTGTCAAAAGAATTACTGGATTGAACCCAATGTTTCATGCCATGTCCGAGATATCATCAATGGGTATCTCTTCATTTGATGGGAGCCCTCCAGACACGTCAGCAGATGCAGCTGTTCCTGTGCAAGATGATCCAATCCATCACTTTTATCAACCTTCGAATACTCCTTTGTCCAGTCATGATCTGGGAGTGAACAATGGATTGGGGGATGTTTGTTCAAATGAAAATGGTCAGCTGAGCAGGGCAGCTGTGGTAGCCGGGAACAGGATGGGACAAACAGCTTCCCTTCAGCGGGTGGCTAGCTTGGAACATCTGCAGAAGAGAATTTGTGGTGGTGCAGATTCATCTGGACCTTCTTCCAGTGGAGATCATTAG 1308 0.474 MDRVFSVDEISDQFWSPPMSTGTHEPSKMNRSASEWAFQRFLQEASVPSPTSPASSSFPPHRNDDPSLHIKDQPKQDPALNTGVTPLQPNVPSPAPSIPKIPVNSDDYQAYLKTKLNLACAAVALSRQQGSLGKAQDSAPFVDSGSQASDSSQVGPQATFKGSGISGPYGSDPSKLLDKDTKAPVGIPSLPVIQKKPAIANKPTTSGSSRELSDDDDVEGETEMTENMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDVSHKYNESGVDNRVLKADIETLRAKVKMAEETVKRITGLNPMFHAMSEISSMGISSFDGSPPDTSADAAVPVQDDPIHHFYQPSNTPLSSHDLGVNNGLGDVCSNENGQLSRAAVVAGNRMGQTASLQRVASLEHLQKRICGGADSSGPSSSGDH 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3948 435 MobiDBLite consensus disorder prediction 1 101 - -
Prci3g3948 435 SMART brlzneu 230 294 IPR004827 GO:0003700|GO:0006355
Prci3g3948 435 CDD bZIP_plant_GBF1 235 286 IPR045314 GO:0003700|GO:0006355
Prci3g3948 435 MobiDBLite consensus disorder prediction 135 228 - -
Prci3g3948 435 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 237 252 IPR004827 GO:0003700|GO:0006355
Prci3g3948 435 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 232 287 IPR004827 GO:0003700|GO:0006355
Prci3g3948 435 MobiDBLite consensus disorder prediction 135 160 - -
Prci3g3948 435 SUPERFAMILY Leucine zipper domain 234 283 IPR046347 GO:0003700|GO:0006355
Prci3g3948 435 PANTHER BASIC LEUCINE ZIPPER 63 1 424 - -
Prci3g3948 435 Coils Coil 243 277 - -
Prci3g3948 435 Pfam bZIP transcription factor 233 284 IPR004827 GO:0003700|GO:0006355
Prci3g3948 435 MobiDBLite consensus disorder prediction 13 62 - -
Prci3g3948 435 Coils Coil 292 319 - -
Prci3g3948 435 Gene3D - 233 287 - -
Prci3g3948 435 FunFam BZIP transcription factor 232 283 - -
Prci3g3948 435 Pfam Basic leucine-zipper C terminal 301 424 IPR020983 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3948 Prci-Chr3 47511801 47515693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3948 1 323 bZIP Transcription Factor Family AT4G02640 42.029 1.63e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Prci3g3948 bZIP_C 1.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3948 K25784 - qsa:O6P43_007630 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3948 3 47511801 47515693 Prci3g3948 3 47511801 47515693 CCT
Prci3g3948 3 47511801 47515693 Prci3g3948 3 47511801 47515693 ECH