Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3936 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGCTCTGCTCTTCTCGTGCGGCATAAGCATGAGAAAAAAAAATATGTGCTGAAGAAAATTCGCCTTGCTCGCCAAACTGAGCGGTCTCGTAGATCTGCACATCAGGAGATGGAGTTAATCTCTAAATTAAAAAATCCATTTATTGTCGAGTATAAGGATTCCTGGGTAGAAAAGGGGTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGGGGAGATATGGCAGAAGCTATAAAGAAGGCTAATGTTTTTTTTCCTGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTTATGGCCCTAGACTACTTACACCTGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTTTTGACGAAAGATCAAGACATACGCCTTGGTGATTTTGGACTTGCAAAAATATTGACTTCAGATGATCTTGCTTCCTCGGTTGTTGGAACTCCTAGTTACATGTGCCCTGAGCTCTTGGCTGATATTCCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTGTATATGAAATGGCAGCTCATAGGCCTGCATTTAAAGCATTTGATATACAGGCACTAATCAACAAGATTAACAAGTCTATAGTGGCTCCACTCCCAACAAAGTATTCTGGTGCATTTCGGAGTCTTGTTAAAAGCATGCTGCGGAAAAATCCTGAGCTTAGACCTAGTGCTGCGGAGCTGCTTGGCCACCGGCATCTTCAACCTTATGTTCACAAGATCCATCTAAAGCTTAACAGCCCCAGGCGAAGTACACTACCAGTTCATTGGTCAGAATCCAACTACGTGAAGAAAACTAGATTTCTGGAGTCAGAAGATGATCCTGTTTCAATCTACAGAGATAAGCAACATTCTTTTGGCAATGATCTGACTCTTAATCCCAGCCTATCTGGAGCTGAGCAAGATTCTGTATGCTCTACCCTAGAAATAGATTGTACTCCAGATAATTTGAATCAGAAGTCTGCAGAAGTATATATTGGAGATAGCCTCGAGGTGAAATCAGTCTGTAAGCCTGTTGTTTCAAGGACATCTAGTTTCACCAAGACTCCAAGACATGCCTCCATAAAGGCTTCTACCACCTCTAAGAAATTAATGGAGCCCCAAAAAAAGCACATGTCGCTTCCTACTCTACGCAAAGCCAGACAATCAGTCAATACATCTCGCAGAGCATCATTTCCATTGCACACAAGAAGTTCTGGTCAACACTCTCGGCATGGGCCTGTTATTGGTTTACTTAGCCATATAAAGTCTCCAGATATTTCAGTAAACTCTCCTAGAATTGATAAGATAGCTGAATTCCCACTGGCGTCATATGAGTATCCACTTTTTCCCATCTATAGAACTCCAACCTCAGTGCAGGGTTCCTCAGGCTCCACACCTTTTGGTGGTCGTTCAATCATGAAAGATAAATGCACGGTTCAAATATGTGATAGAGCCTCTGTCAAGCATCGATTGACAGATTCATGGCAGGGAATCAAGCTAAACACGTTTCGGGAAAATGCTGAGGATAAAAGTGGCTCCTCTGATCAAAATGCAACTGTTGGAGCATCAAGCCATGCCTCGTCAGACATGTGCCGCCGGCAGTTTGACACCTCATCATACCAGCAAAGGGCTGAAGCGTTGGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAACATGAAAGGTATGAAGAACTTGGGGTTTTATTGAAACCATTTGGACCAGGGAAGGTCTCTCCTAGGGAAACTGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAACACTCAACCGTGA 1845 0.4238 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLKNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGXFFPEEKLCKWLVQLLMALDYLHLNHILHRDVKCSNIFLTKDQDIRLGDFGLAKILTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHRPAFKAFDIQALINKINKSIVAPLPTKYSGAFRSLVKSMLRKNPELRPSAAELLGHRHLQPYVHKIHLKLNSPRRSTLPVHWSESNYVKKTRFLESEDDPVSIYRDKQHSFGNDLTLNPSLSGAEQDSVCSTLEIDCTPDNLNQKSAEVYIGDSLEVKSVCKPVVSRTSSFTKTPRHASIKASTTSKKLMEPQKKHMSLPTLRKARQSVNTSRRASFPLHTRSSGQHSRHGPVIGLLSHIKSPDISVNSPRIDKIAEFPLASYEYPLFPIYRTPTSVQGSSGSTPFGGRSIMKDKCTVQICDRASVKHRLTDSWQGIKLNTFRENAEDKSGSSDQNATVGASSHASSDMCRRQFDTSSYQQRAEALEGLLEFSARLLQHERYEELGVLLKPFGPGKVSPRETAIWLSKSFKENTQP 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3936 615 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci3g3936 615 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Prci3g3936 615 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci3g3936 615 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Prci3g3936 615 MobiDBLite consensus disorder prediction 524 543 - -
Prci3g3936 615 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Prci3g3936 615 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci3g3936 615 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 570 - -
Prci3g3936 615 SUPERFAMILY Protein kinase-like (PK-like) 1 301 IPR011009 -
Prci3g3936 615 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Prci3g3936 615 Gene3D Transferase(Phosphotransferase) domain 1 84 274 - -
Prci3g3936 615 CDD STKc_Nek 3 253 - -
Prci3g3936 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3936 Prci-Chr3 47456983 47463169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3936 10 289 MAP Kinase Kinase Kinase AT1G53570 29.667 1.00e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Prci3g3936 Pkinase 1.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3936 K08857 - gmx:100804898 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3936 3 47456983 47463169 Prci3g3936 3 47456983 47463169 CCT
Prci3g3936 3 47456983 47463169 Prci3g3936 3 47456983 47463169 ECH