LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci3g3888	ATGGGGTGTGTGATTAGTCGAGAAGTCTCATCTGAAAAAACCTCAGAGGTGAAAGAGGATAGGAATTTGAGTGCTGGATCGAACGGGAAGATAGATGAAAACTCCACGGGGACAGCTGAAGGGGAAGTGGTTGAGGTCCAGAACGTTGGCAACCAAAAGGAAGAGAGAAATGATTATGATGGTGGGGCCCAGGTTCAGCAGCCCCGGGGCAGAAGGAGAAGGTCAAAGCCAAACCCAAGGCTAAGTAACCCTCCGAAGCATTTGCGGGGGGAGCAAGCAGCGGCTGGGTGGCCCCCGTGGCTTACGGCAGTGTGTGGAGAAGCACTTAGTGGGTGGATTCCTCGGAAGGCTGACACATTTGAGAAAATTGATAAGATTGGGCAAGGAACATATAGCAATGTGTACAAAGCTAAAGACATGTTGACTGGTAAAATTGTTGCACTAAAGAAGGTTCGGTTTGACAATTTGGAGCCTGAGAGTGTGAAGTTCATGGCCAGAGAGATTCTTATTTTGCGAAGATTGGATCATCCCAATGTTGTAAAGTTGGAAGGTTTAGTCACATCAAGAATGTCCTGTAGTTTGTATTTGGTGTTTAATTACATGGAGCATGATTTGGCTGGACTTGCTGCAAGCCCAGGGATCAAGTTCACCGAGCCTCAGGTCAAATGTTACATGCACCAGCTATTATCAGGACTTGAGCACTGTCATCACCTTCGAGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAATACTTAAGATAGCTGACTTTGGATTGGCATCTTTCTTTGATCCTAACCATAAGCTGCCGATGACTAATCGTGTAGTTACACTTTGGTATCGACCTCCTGAGTTGCTTCTTGGTGCCACAGAATATGGTGTGGGAGTGGACCTTTGGAGCGCAGGTTGCATTTTGGGAGAGTTATTGGCAGGAAAGCCAATTATGCCTGGTCGCACAGAGGTTACAGTGGAGCAGCTGCATAAGATATACAAACTATGTGGTTCCCCCTCAGATGAGTACTGGAAGAAGTCAAAGTTGCCCAATGCTACCTTGTTTAAACCTCGAGAGCCTTACAAGAGATGCATACGAGAGACATTTAAAGATTTTCCACCTTTTGCACTTATGCTTATTGATACTCTTCTTGCACTTGATCCTGCAGAACGGAAGACTGCATCAGATGCCTTAAGAAGTGAGTTCTTCACCACAGAACCTTATGCCTGTGATCCTTCTAGTCTTCCCAAATATCCGCCAAGCAAGGAAATGGATGTTAAACAGCGAGACGATGAAGCAAGGAGACAACGAGCTGCAGGCAAAGCTCAAGTTGATGGTGCAAAGAAACCCCGAACACGTAATCGTGCTAAACCTAATCCTGCTCCTGAAGCCAACGCTGAGCTTCAATCCAACATTGATAGAAGGCGTCTAATAACTCGTGCAAATGCAAAGAGCAAGAGCGAGAAGTTCCCGCCTCCACATCAAGATGGACAACTTGGTTTTCCCTTGGGATCTTCACATCATATTGATTCAGATATTGTTCCTCCTGATGTCTCTTTTAGTTCAACCTCATTTACGCATTCAAAAGAACCGTTCCAAGCTTGGTCAGGTCCCATTGATGCACCCAAGCAGAAGAAACATGCTACCAGTGATGCACTGGATTTATCGAAACAACGTACAGGTGCCCTCAAGAGTAAACGTTAA	1713	0.4542	MGCVISREVSSEKTSEVKEDRNLSAGSNGKIDENSTGTAEGEVVEVQNVGNQKEERNDYDGGAQVQQPRGRRRRSKPNPRLSNPPKHLRGEQAAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFNYMEHDLAGLAASPGIKFTEPQVKCYMHQLLSGLEHCHHLRVLHRDIKGSNLLIDNEGILKIADFGLASFFDPNHKLPMTNRVVTLWYRPPELLLGATEYGVGVDLWSAGCILGELLAGKPIMPGRTEVTVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRETFKDFPPFALMLIDTLLALDPAERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDVKQRDDEARRQRAAGKAQVDGAKKPRTRNRAKPNPAPEANAELQSNIDRRRLITRANAKSKSEKFPPPHQDGQLGFPLGSSHHIDSDIVPPDVSFSSTSFTHSKEPFQAWSGPIDAPKQKKHATSDALDLSKQRTGALKSKR	570

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci3g3888	570	MobiDBLite	consensus disorder prediction	1	93	-	-
	Prci3g3888	570	FunFam	probable serine/threonine-protein kinase At1g54610	107	202	-	-
	Prci3g3888	570	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	240	252	IPR008271	GO:0004672\|GO:0006468
	Prci3g3888	570	Gene3D	Transferase(Phosphotransferase) domain 1	203	446	-	-
	Prci3g3888	570	SUPERFAMILY	Protein kinase-like (PK-like)	115	413	IPR011009	-
	Prci3g3888	570	ProSitePatterns	Protein kinases ATP-binding region signature.	126	149	IPR017441	GO:0005524
	Prci3g3888	570	FunFam	probable serine/threonine-protein kinase At1g54610	203	446	-	-
	Prci3g3888	570	ProSiteProfiles	Protein kinase domain profile.	120	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci3g3888	570	MobiDBLite	consensus disorder prediction	472	494	-	-
	Prci3g3888	570	Gene3D	Phosphorylase Kinase; domain 1	107	202	-	-
	Prci3g3888	570	MobiDBLite	consensus disorder prediction	519	534	-	-
	Prci3g3888	570	MobiDBLite	consensus disorder prediction	414	570	-	-
	Prci3g3888	570	MobiDBLite	consensus disorder prediction	11	26	-	-
	Prci3g3888	570	Pfam	Protein kinase domain	120	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci3g3888	570	CDD	STKc_CDK9_like	120	406	-	-
	Prci3g3888	570	MobiDBLite	consensus disorder prediction	425	455	-	-
	Prci3g3888	570	SMART	serkin_6	120	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci3g3888	570	PANTHER	CELL DIVISION PROTEIN KINASE	118	410	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci3g3888	Prci-Chr3	47166437	47172772	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci3g3888	112	446	Core Cell Cycle Gene Families	AT5G10270	52.991	5.18e-122	367

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Prci3g3888		Pkinase	3.9e-66	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci3g3888	K08819		-	gmx:100817289	904.049